9G8U | pdb_00009g8u

Structure of the LipA:LipB complex from Acinetobacter baumannii


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.17 Å
  • R-Value Free: 
    0.295 (Depositor), 0.299 (DCC) 
  • R-Value Work: 
    0.277 (Depositor), 0.278 (DCC) 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Architecture of an embracing lipase-foldase complex of the type II secretion system of Acinetobacter baumannii.

de Oliveira Silva, Y.R.Contreras-Martel, C.Rodrigues de Melo, R.Zanphorlin, L.M.Trindade, D.M.Dessen, A.

(2025) Structure 33: 601-612.e4

  • DOI: https://doi.org/10.1016/j.str.2024.12.022
  • Primary Citation of Related Structures:  
    9G8U

  • PubMed Abstract: 

    Acinetobacter baumannii is a major human pathogen responsible for a growing number of multi-antibiotic-resistant infections, and of critical priority for the World Health Organization (WHO). A. baumannii employs a type II secretion system (T2SS) to secrete toxins extracellularly to enable cytotoxicity and colonization. Lipase LipA, secreted by the A. baumannii T2SS, is required for virulence and fitness, and in the periplasm is maintained in an active state by its essential foldase, LipB. Here we report that LipA is able to recognize lipids of different chain lengths at extremes of pH and temperature, thanks to its stabilization by LipB through an extended, highly helical "embrace." A vast bioinformatic analysis indicates that LipB-like foldases are widespread over numerous proteobacteria, and thus the extended foldase architecture shown here could be widespread. These results provide new insight into A. baumannii's adaptability as a pathogen in different environments and could facilitate the development of novel antibacterials.


  • Organizational Affiliation
    • Brazilian Biosciences National Laboratory (LNBio), CNPEM, Campinas São Paulo 13084-971, Brazil; Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Campinas, São Paulo 13083-970, Brazil.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Lactonizing lipase302Acinetobacter baumanniiMutation(s): 0 
Gene Names: lipHMPREF0010_02549
EC: 3.1.1.3
UniProt
Find proteins for A0A7U4DEQ9 (Acinetobacter baumannii (strain ACICU))
Explore A0A7U4DEQ9 
Go to UniProtKB:  A0A7U4DEQ9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7U4DEQ9
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Lipase chaperone302Acinetobacter baumanniiMutation(s): 0 
Gene Names: lifOEA706_01485EA722_01050P9867_05230
UniProt
Find proteins for A0A7U4DET5 (Acinetobacter baumannii (strain ACICU))
Explore A0A7U4DET5 
Go to UniProtKB:  A0A7U4DET5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7U4DET5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.17 Å
  • R-Value Free:  0.295 (Depositor), 0.299 (DCC) 
  • R-Value Work:  0.277 (Depositor), 0.278 (DCC) 
Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 133.686α = 90
b = 133.686β = 90
c = 139.715γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Sao Paulo Research Foundation (FAPESP)Brazil2017/12436-9 and 2018/04344-0

Revision History  (Full details and data files)

  • Version 1.0: 2025-02-19
    Type: Initial release
  • Version 1.1: 2025-03-19
    Changes: Database references