☰ Navigation Tabs
Structure of the LipA:LipB complex from Acinetobacter baumannii
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 1.5 M ammonium sulfate, 0.1 M Bis-Tris propane (pH 7.5), 5% polyethylene glycol (PEG) 400
Crystal Properties Matthews coefficient Solvent content 2.65 53.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.686 α = 90 b = 133.686 β = 90 c = 139.715 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2021-09-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 .97718 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.174 48.296 96.2 0.997 5.57 19 23444
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.174 3.37 97.4 0.214 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.174 48.296 23444 1966 94.365 0.279 0.2771 0.2784 0.295 0.2986 151.148
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.254 1.627 3.254 -10.556
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 30.002 r_scangle_it 24.384 r_mcangle_it 21.611 r_scbond_it 15.922 r_mcbond_it 13.825 r_dihedral_angle_3_deg 6.592 r_dihedral_angle_6_deg 5.361 r_dihedral_angle_1_deg 3.121 r_angle_refined_deg 1.265 r_dihedral_angle_2_deg 1.222
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 30.002 r_scangle_it 24.384 r_mcangle_it 21.611 r_scbond_it 15.922 r_mcbond_it 13.825 r_dihedral_angle_3_deg 6.592 r_dihedral_angle_6_deg 5.361 r_dihedral_angle_1_deg 3.121 r_angle_refined_deg 1.265 r_dihedral_angle_2_deg 1.222 r_nbtor_refined 0.308 r_nbd_refined 0.256 r_symmetry_nbd_refined 0.199 r_metal_ion_refined 0.198 r_symmetry_xyhbond_nbd_refined 0.136 r_xyhbond_nbd_refined 0.112 r_chiral_restr 0.092 r_gen_planes_refined 0.007 r_bond_refined_d 0.006 r_ext_dist_refined_b 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4605 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing