9FU8 | pdb_00009fu8

Structure of the ASH1 domain of Drosophila melanogaster Spd-2


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: target function 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

The conserved Spd-2/CEP192 domain adopts a unique protein fold to promote centrosome scaffold assembly.

Hu, L.Wainman, A.Andreeva, A.Apizi, M.Alvarez-Rodrigo, I.Wong, S.S.Saurya, S.Sheppard, D.Cottee, M.Johnson, S.Lea, S.M.Raff, J.W.van Breugel, M.Feng, Z.

(2025) Sci Adv 11: eadr5744-eadr5744

  • DOI: https://doi.org/10.1126/sciadv.adr5744
  • Primary Citation of Related Structures:  
    9C72, 9FH8, 9FU8

  • PubMed Abstract: 

    Centrosomes form when centrioles assemble pericentriolar material (PCM) around themselves. Spd-2/CEP192 proteins, defined by a conserved "Spd-2 domain" (SP2D) comprising two closely spaced AspM-Spd-2-Hydin (ASH) domains, play a critical role in centrosome assembly. Here, we show that the SP2D does not target Drosophila Spd-2 to centrosomes but rather promotes PCM scaffold assembly. Crystal structures of the human and honeybee SP2D reveal an unusual "extended cradle" structure mediated by a conserved interaction interface between the two ASH domains. Mutations predicted to perturb this interface, including a human mutation associated with male infertility and Mosaic Variegated Aneuploidy, disrupt PCM scaffold assembly in flies. The SP2D is monomeric in solution, but the Drosophila SP2D can form higher-order oligomers upon phosphorylation by PLK1 (Polo-like kinase 1). Crystal-packing interactions and AlphaFold predictions suggest how SP2Ds might self-assemble, and mutations associated with one such potential dimerization interface markedly perturb SP2D oligomerization in vitro and PCM scaffold assembly in vivo.


  • Organizational Affiliation
    • State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
BcDNA.LD24702113Drosophila melanogasterMutation(s): 0 
Gene Names: 
EC: 3.6.1.13
UniProt
Find proteins for Q9VV79 (Drosophila melanogaster)
Explore Q9VV79 
Go to UniProtKB:  Q9VV79
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VV79
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom215523
Wellcome TrustUnited Kingdom209194

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-02
    Type: Initial release