9FB1 | pdb_00009fb1

Crystal structure of Rv2242 regulator N-terminal fragment (1-160)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.59 Å
  • R-Value Free: 
    0.325 (Depositor), 0.335 (DCC) 
  • R-Value Work: 
    0.250 (Depositor), 0.247 (DCC) 
  • R-Value Observed: 
    0.254 (Depositor) 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


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Literature

Domain architecture of the Mycobacterium tuberculosis MabR ( Rv2242 ), a member of the PucR transcription factor family.

Megalizzi, V.Tanina, A.Grosse, C.Mirgaux, M.Legrand, P.Dias Mirandela, G.Wohlkonig, A.Bifani, P.Wintjens, R.

(2024) Heliyon 10: e40494-e40494

  • DOI: https://doi.org/10.1016/j.heliyon.2024.e40494
  • Primary Citation of Related Structures:  
    9F80, 9FB1

  • PubMed Abstract: 

    MabR ( Rv2242 ), a PucR-type transcription factor, plays a crucial role in regulating mycolic acid biosynthesis in Mycobacterium tuberculosis . To understand its regulatory mechanisms, we determined the crystal structures of its N-terminal and C-terminal domains. The N-terminal domain adopts a globin-like fold, while the C-terminal domain comprises an α/β GGDEF domain and an all-α effector domain with a helix-turn-helix DNA-binding motif. This unique domain combination is specific to Actinomycetes . Biochemical and computational studies suggest that full-length MabR forms both dimeric and tetrameric assemblies in solution. Structural analysis revealed two distinct dimerization interfaces within the N- and C-terminal domains, further supporting a tetrameric organization. These findings provide valuable insights into the domain architecture, oligomeric state, and potential regulatory mechanisms of MabR.


  • Organizational Affiliation
    • Unit of Microbiology, Bioorganic and Macromolecular Chemistry, Department of Research in Drug Development, Faculty of Pharmacy, Université Libre de Bruxelles, Belgium.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein Rv2242
A, B, C, D
181Mycobacterium tuberculosis H37RvMutation(s): 0 
Gene Names: Rv2242MTCY427.23
UniProt
Find proteins for P9WPH5 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Explore P9WPH5 
Go to UniProtKB:  P9WPH5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP9WPH5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.59 Å
  • R-Value Free:  0.325 (Depositor), 0.335 (DCC) 
  • R-Value Work:  0.250 (Depositor), 0.247 (DCC) 
  • R-Value Observed: 0.254 (Depositor) 
Space Group: P 41 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 107.19α = 90
b = 107.19β = 90
c = 176.513γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Fonds National de la Recherche Scientifique (FNRS)BelgiumCR40003580

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-18
    Type: Initial release