9F5Y | pdb_00009f5y

Structure of the Chlamydomonas reinhardtii respiratory complex I from respiratory supercomplex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.51 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

In-cell architecture of the mitochondrial respiratory chain.

Waltz, F.Righetto, R.D.Lamm, L.Salinas-Giege, T.Kelley, R.Zhang, X.Obr, M.Khavnekar, S.Kotecha, A.Engel, B.D.

(2025) Science 387: 1296-1301

  • DOI: https://doi.org/10.1126/science.ads8738
  • Primary Citation of Related Structures:  
    9F5X, 9F5Y, 9F5Z, 9F60, 9F61, 9F62

  • PubMed Abstract: 

    Mitochondria regenerate adenosine triphosphate (ATP) through oxidative phosphorylation. This process is carried out by five membrane-bound complexes collectively known as the respiratory chain, working in concert to transfer electrons and pump protons. The precise organization of these complexes in native cells is debated. We used in situ cryo-electron tomography to visualize the native structures and organization of several major mitochondrial complexes in Chlamydomonas reinhardtii cells. ATP synthases and respiratory complexes segregate into curved and flat crista membrane domains, respectively. Respiratory complexes I, III, and IV assemble into a respirasome supercomplex, from which we determined a native 5-angstrom (Å) resolution structure showing binding of electron carrier cytochrome c . Combined with single-particle cryo-electron microscopy at 2.4-Å resolution, we model how the respiratory complexes organize inside native mitochondria.


  • Organizational Affiliation
    • Biozentrum, University of Basel, Basel, Switzerland.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase 24 kD subunit282Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3
Membrane Entity: Yes 
UniProt
Find proteins for Q6V9B3 (Chlamydomonas reinhardtii)
Explore Q6V9B3 
Go to UniProtKB:  Q6V9B3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6V9B3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial484Chlamydomonas reinhardtiiMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for A8ICJ1 (Chlamydomonas reinhardtii)
Explore A8ICJ1 
Go to UniProtKB:  A8ICJ1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8ICJ1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase 78 kDa subunit733Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data)
UniProt
Find proteins for A8IVJ7 (Chlamydomonas reinhardtii)
Explore A8IVJ7 
Go to UniProtKB:  A8IVJ7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8IVJ7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase 30kDa subunit domain-containing protein282Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8IHL3 (Chlamydomonas reinhardtii)
Explore A8IHL3 
Go to UniProtKB:  A8IHL3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8IHL3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase 49 kD subunit467Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3
UniProt
Find proteins for Q6V9A8 (Chlamydomonas reinhardtii)
Explore Q6V9A8 
Go to UniProtKB:  Q6V9A8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6V9A8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase subunit 10164Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3
UniProt
Find proteins for Q6V9B0 (Chlamydomonas reinhardtii)
Explore Q6V9B0 
Go to UniProtKB:  Q6V9B0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6V9B0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase subunit 8231Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3
UniProt
Find proteins for Q6V9B1 (Chlamydomonas reinhardtii)
Explore Q6V9B1 
Go to UniProtKB:  Q6V9B1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6V9B1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
B14.5a118Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8JHV4 (Chlamydomonas reinhardtii)
Explore A8JHV4 
Go to UniProtKB:  A8JHV4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8JHV4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial NADH:ubiquinone oxidoreductase 18 kDa subunit165Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3
Membrane Entity: Yes 
UniProt
Find proteins for Q6UKY3 (Chlamydomonas reinhardtii)
Explore Q6UKY3 
Go to UniProtKB:  Q6UKY3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6UKY3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Acyl carrier proteinJ,
RA [auth r]
128Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q6UKY4 (Chlamydomonas reinhardtii)
Explore Q6UKY4 
Go to UniProtKB:  Q6UKY4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6UKY4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase B14 subunit138Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data)
Membrane Entity: Yes 
UniProt
Find proteins for Q6UKY9 (Chlamydomonas reinhardtii)
Explore Q6UKY9 
Go to UniProtKB:  Q6UKY9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6UKY9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial187Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q6UP29 (Chlamydomonas reinhardtii)
Explore Q6UP29 
Go to UniProtKB:  Q6UP29
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6UP29
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase 13 kD-like subunit154Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data)
UniProt
Find proteins for Q6UP30 (Chlamydomonas reinhardtii)
Explore Q6UP30 
Go to UniProtKB:  Q6UP30
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6UP30
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12156Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q6UP31 (Chlamydomonas reinhardtii)
Explore Q6UP31 
Go to UniProtKB:  Q6UP31
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6UP31
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase B8 subunit101Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3
Membrane Entity: Yes 
UniProt
Find proteins for Q6V9A9 (Chlamydomonas reinhardtii)
Explore Q6V9A9 
Go to UniProtKB:  Q6V9A9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6V9A9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Putative NADH:ubiquinone oxidoreductase 39 kDa subunit397Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q6V506 (Chlamydomonas reinhardtii)
Explore Q6V506 
Go to UniProtKB:  Q6V506
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6V506
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 1292Chlamydomonas reinhardtiiMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for P11658 (Chlamydomonas reinhardtii)
Explore P11658 
Go to UniProtKB:  P11658
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP11658
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 2387Chlamydomonas reinhardtiiMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for P08740 (Chlamydomonas reinhardtii)
Explore P08740 
Go to UniProtKB:  P08740
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08740
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 3279Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q6V502 (Chlamydomonas reinhardtii)
Explore Q6V502 
Go to UniProtKB:  Q6V502
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6V502
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 4443Chlamydomonas reinhardtiiMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for P20113 (Chlamydomonas reinhardtii)
Explore P20113 
Go to UniProtKB:  P20113
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP20113
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase subunit 4L227Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q84K56 (Chlamydomonas reinhardtii)
Explore Q84K56 
Go to UniProtKB:  Q84K56
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ84K56
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 5546Chlamydomonas reinhardtiiMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for P08739 (Chlamydomonas reinhardtii)
Explore P08739 
Go to UniProtKB:  P08739
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08739
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 6162Chlamydomonas reinhardtiiMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for P10329 (Chlamydomonas reinhardtii)
Explore P10329 
Go to UniProtKB:  P10329
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP10329
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
ASHI149Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8JCW1 (Chlamydomonas reinhardtii)
Explore A8JCW1 
Go to UniProtKB:  A8JCW1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8JCW1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
P964Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A2K3DYZ8 (Chlamydomonas reinhardtii)
Explore A0A2K3DYZ8 
Go to UniProtKB:  A0A2K3DYZ8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DYZ8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
KFYI124Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8J6N0 (Chlamydomonas reinhardtii)
Explore A8J6N0 
Go to UniProtKB:  A8J6N0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8J6N0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
AGGGAA [auth a]129Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8J815 (Chlamydomonas reinhardtii)
Explore A8J815 
Go to UniProtKB:  A8J815
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8J815
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
ESSSBA [auth b]172Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8J843 (Chlamydomonas reinhardtii)
Explore A8J843 
Go to UniProtKB:  A8J843
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8J843
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
B9CA [auth c]67Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8IVG9 (Chlamydomonas reinhardtii)
Explore A8IVG9 
Go to UniProtKB:  A8IVG9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8IVG9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial NADH:ubiquinone oxidoreductase 10 kDa subunitDA [auth d]86Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data)
UniProt
Find proteins for Q6QAY2 (Chlamydomonas reinhardtii)
Explore Q6QAY2 
Go to UniProtKB:  Q6QAY2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6QAY2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial NADH:ubiquinone oxidoreductase 23 kDa subunitEA [auth e]219Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data)
Membrane Entity: Yes 
UniProt
Find proteins for Q6QAY4 (Chlamydomonas reinhardtii)
Explore Q6QAY4 
Go to UniProtKB:  Q6QAY4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6QAY4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial NADH:ubiquinone oxidoreductase 7.5 kDa subunitFA [auth f]65Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data)
Membrane Entity: Yes 
UniProt
Find proteins for Q6QIV4 (Chlamydomonas reinhardtii)
Explore Q6QIV4 
Go to UniProtKB:  Q6QIV4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6QIV4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial putative NADH:ubiquinone oxidoreductase 6.5 kDa subunitGA [auth g]55Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data)
Membrane Entity: Yes 
UniProt
Find proteins for Q6QIV8 (Chlamydomonas reinhardtii)
Explore Q6QIV8 
Go to UniProtKB:  Q6QIV8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6QIV8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial NADH:ubiquinone oxidoreductase 13 kDa subunitHA [auth h]142Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data)
Membrane Entity: Yes 
UniProt
Find proteins for Q6QIV9 (Chlamydomonas reinhardtii)
Explore Q6QIV9 
Go to UniProtKB:  Q6QIV9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6QIV9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase 15 kDa subunit-likeIA [auth i]81Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data)
Membrane Entity: Yes 
UniProt
Find proteins for Q6TH88 (Chlamydomonas reinhardtii)
Explore Q6TH88 
Go to UniProtKB:  Q6TH88
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6TH88
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7JA [auth j]86Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q6UKY7 (Chlamydomonas reinhardtii)
Explore Q6UKY7 
Go to UniProtKB:  Q6UKY7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6UKY7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9KA [auth k]117Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q6UKY8 (Chlamydomonas reinhardtii)
Explore Q6UKY8 
Go to UniProtKB:  Q6UKY8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6UKY8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase 20,9 kD-like subunitLA [auth l]121Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data)
Membrane Entity: Yes 
UniProt
Find proteins for Q6UP28 (Chlamydomonas reinhardtii)
Explore Q6UP28 
Go to UniProtKB:  Q6UP28
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6UP28
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13MA [auth m]142Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q6UP32 (Chlamydomonas reinhardtii)
Explore Q6UP32 
Go to UniProtKB:  Q6UP32
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6UP32
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
Putative NADH:ubiquinone oxidoreductase 12.5 kDa subunitNA [auth n]106Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q6V504 (Chlamydomonas reinhardtii)
Explore Q6V504 
Go to UniProtKB:  Q6V504
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6V504
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Putative NADH:ubiquinone oxidoreductase 17.8 kDa subunitOA [auth o]155Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q6V505 (Chlamydomonas reinhardtii)
Explore Q6V505 
Go to UniProtKB:  Q6V505
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6V505
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial NADH:ubiquinone oxidoreductase 16 kDa subunitPA [auth p]130Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data)
UniProt
Find proteins for Q6QAY0 (Chlamydomonas reinhardtii)
Explore Q6QAY0 
Go to UniProtKB:  Q6QAY0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6QAY0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial NADH:ubiquinone oxidoreductase 19 kDa subunitQA [auth q]197Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data)
UniProt
Find proteins for Q6QAY1 (Chlamydomonas reinhardtii)
Explore Q6QAY1 
Go to UniProtKB:  Q6QAY1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6QAY1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial NADH:ubiquinone oxidoreductase 32 kDa subunitSA [auth s]312Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data)
UniProt
Find proteins for Q6S7R7 (Chlamydomonas reinhardtii)
Explore Q6S7R7 
Go to UniProtKB:  Q6S7R7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6S7R7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
CAG2 - CA-likeTA [auth t]279Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8JFK6 (Chlamydomonas reinhardtii)
Explore A8JFK6 
Go to UniProtKB:  A8JFK6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8JFK6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
CAG1UA [auth u]229Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8JHY4 (Chlamydomonas reinhardtii)
Explore A8JHY4 
Go to UniProtKB:  A8JHY4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8JHY4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
P10VA [auth v]45Chlamydomonas reinhardtiiMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial NADH:ubiquinone oxidoreductase 9 kDa subunitWA [auth w]109Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data)
UniProt
Find proteins for Q6QAY5 (Chlamydomonas reinhardtii)
Explore Q6QAY5 
Go to UniProtKB:  Q6QAY5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6QAY5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
NUOP8XA [auth x]157Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8IS53 (Chlamydomonas reinhardtii)
Explore A8IS53 
Go to UniProtKB:  A8IS53
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8IS53
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
NUOP7YA [auth y]118Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8JA22 (Chlamydomonas reinhardtii)
Explore A8JA22 
Go to UniProtKB:  A8JA22
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8JA22
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 13 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CDL
Query on CDL

Download Ideal Coordinates CCD File 
AD [auth y]
DC [auth V]
HC [auth W]
PC [auth h]
RB [auth R]
AD [auth y],
DC [auth V],
HC [auth W],
PC [auth h],
RB [auth R],
VC [auth u],
WC [auth u],
YC [auth x]
CARDIOLIPIN
C81 H156 O17 P2
XVTUQDWPJJBEHJ-KZCWQMDCSA-L
COO
Query on COO

Download Ideal Coordinates CCD File 
SC [auth s]CROTONYL COENZYME A
C25 H40 N7 O17 P3 S
KFWWCMJSYSSPSK-XBTRWLRFSA-N
PC7
Query on PC7

Download Ideal Coordinates CCD File 
MB [auth Q],
PB [auth R],
UC [auth u],
XB [auth T]
(7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE
C42 H85 N O8 P
PZNPLUBHRSSFHT-FAIXQHPJSA-O
PGT
Query on PGT

Download Ideal Coordinates CCD File 
IC [auth b],
QC [auth l],
WB [auth T],
ZB [auth T]
(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE
C40 H79 O10 P
KBPVYRBBONZJHF-AMAPPZPBSA-N
NDP
Query on NDP

Download Ideal Coordinates CCD File 
KB [auth P]NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
PTY
Query on PTY

Download Ideal Coordinates CCD File 
AC [auth T]
EC [auth V]
FC [auth V]
GC [auth V]
IB [auth G]
AC [auth T],
EC [auth V],
FC [auth V],
GC [auth V],
IB [auth G],
KC [auth e],
LC [auth e],
OB [auth R],
OC [auth h],
QB [auth R],
SB [auth R],
UB [auth S],
VB [auth T],
YB [auth T],
ZC [auth x]
PHOSPHATIDYLETHANOLAMINE
C40 H80 N O8 P
NJGIRBISCGPRPF-KXQOOQHDSA-N
3PH
Query on 3PH

Download Ideal Coordinates CCD File 
BC [auth V]
CC [auth V]
JC [auth c]
MC [auth g]
NB [auth R]
BC [auth V],
CC [auth V],
JC [auth c],
MC [auth g],
NB [auth R],
NC [auth h],
TB [auth S],
XC [auth w]
1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
C39 H77 O8 P
YFWHNAWEOZTIPI-DIPNUNPCSA-N
8Q1
Query on 8Q1

Download Ideal Coordinates CCD File 
JB [auth J],
RC [auth r]
S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate
C23 H45 N2 O8 P S
MVHUOSAYFQKAMT-NRFANRHFSA-N
UQ5
Query on UQ5

Download Ideal Coordinates CCD File 
LB [auth Q]2,3-DIMETHOXY-5-METHYL-6-(3,11,15,19-TETRAMETHYL-EICOSA-2,6,10,14,18-PENTAENYL)-[1,4]BENZOQUINONE
C34 H50 O4
NYFAQDMDAFCWPU-UVCHAVPFSA-N
FMN
Query on FMN

Download Ideal Coordinates CCD File 
AB [auth B]FLAVIN MONONUCLEOTIDE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
SF4
Query on SF4

Download Ideal Coordinates CCD File 
BB [auth B]
DB [auth C]
EB [auth C]
FB [auth F]
GB [auth G]
BB [auth B],
DB [auth C],
EB [auth C],
FB [auth F],
GB [auth G],
HB [auth G]
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-UHFFFAOYSA-N
FES
Query on FES

Download Ideal Coordinates CCD File 
CB [auth C],
ZA [auth A]
FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
ZN
Query on ZN

Download Ideal Coordinates CCD File 
TC [auth s]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.51 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Alexander von Humboldt FoundationGermany--
Swiss National Science FoundationSwitzerland210561

Revision History  (Full details and data files)

  • Version 1.0: 2025-03-12
    Type: Initial release
  • Version 1.1: 2025-04-02
    Changes: Data collection, Database references