9ENO | pdb_00009eno

Crystal structure of ComplemEnT1.4 (CEnT1.4), an engineered photoenzyme for selective [2+2]-cycloadditions

  • Classification: BIOSYNTHETIC PROTEIN
  • Organism(s): Loligo vulgaris
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2024-03-13 Released: 2025-07-16 
  • Deposition Author(s): Hardy, F.J., Crawshaw, R.C., Green, A.P.
  • Funding Organization(s): European Research Council (ERC), Biotechnology and Biological Sciences Research Council (BBSRC), Human Frontier Science Program (HFSP), Engineering and Physical Sciences Research Council

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 
    0.226 (Depositor), 0.191 (DCC) 
  • R-Value Work: 
    0.181 (Depositor) 
  • R-Value Observed: 
    0.183 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history

Literature

Photosensitizer Repositioning Affords an Enantiocomplementary Enzyme for [2 + 2]-Cycloadditions.

Sun, C.Kohn, A.R.Smithson, R.Hardy, F.J.Trimble, J.S.Cao, Y.Johannissen, L.O.Hay, S.Crawshaw, R.Green, A.P.

(2025) Angew Chem Int Ed Engl 64: e202503576-e202503576

  • DOI: https://doi.org/10.1002/anie.202503576
  • Primary Citation Related Structures: 
    9ENO

  • PubMed Abstract: 

    The combination of genetic code expansion and directed evolution has recently given rise to enantioselective photoenzymes for [2 + 2]-cycloadditions of quinolone and indole derivatives. However, the enzymes reported to date only allow access to one enantiomeric series of the strained cyclobutane products. Here, guided by a crystal structure of our previously engineered enzyme EnT1.3, we show how judicious repositioning of the genetically programmed benzophenone photosensitizer affords an enantiocomplementary [2 + 2]-cyclase, CEnT1.0. Following directed evolution, a proficient and oxygen-tolerant photoenzyme (CEnT1.4) emerged that promotes [2 + 2]-cycloadditions of a quinolone derivative with exquisite enantiocontrol (99% e.e.) and substantially enhanced regioselectivity compared with EnT1.3 (r.r. 62:1 vs. 9:1). Structural analysis of CEnT1.4, coupled with molecular dynamic simulations, reveals a well-sculpted active site pocket that pre-organises the substrate for regio- and enantioselective catalysis. This study highlights the versatility offered by genetically programmed (photo)catalytic elements when developing enzymes for altered stereochemical outcomes.


  • Organizational Affiliation
    • Department of Chemistry & Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK.

Macromolecule Content 

  • Total Structure Weight: 73.66 kDa 
  • Atom Count: 5,328 
  • Modeled Residue Count: 612 
  • Deposited Residue Count: 660 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Diisopropyl-fluorophosphatase
A, B
330Loligo vulgarisMutation(s): 0 
EC: 3.1.8.2 (PDB Primary Data), 3.8.2.2 (UniProt)
UniProt
Find proteins for Q7SIG4 (Loligo vulgaris)
Explore Q7SIG4 
Go to UniProtKB:  Q7SIG4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7SIG4
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free:  0.226 (Depositor), 0.191 (DCC) 
  • R-Value Work:  0.181 (Depositor) 
  • R-Value Observed: 0.183 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 51.97α = 90
b = 73.917β = 92.85
c = 74.87γ = 90
Software Package:
Software NamePurpose
PDB-REDOrefinement
PHENIXrefinement
DIALSdata reduction
DIALSdata scaling
PHENIXphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union757991
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/M027023/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/M027023/1
Human Frontier Science Program (HFSP)FranceRGP0004/2022
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/S507969/1
Engineering and Physical Sciences Research CouncilUnited KingdomEP/W524347/1

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-16
    Type: Initial release
  • Version 1.1: 2025-09-03
    Changes: Database references