9C1L | pdb_00009c1l

Rhesus rotavirus (VP1 structure at 2.65 Angstrom resolution)

• PDB DOI: https://doi.org/10.2210/pdb9C1L/pdb
• EM Map EMD-45123: EMDB EMDataResource

• Classification: VIRAL PROTEIN
• Organism(s): Simian rotavirus A strain RRV
• Expression System: Simian rotavirus A strain RRV
• Mutation(s): No 


• Deposited: 2024-05-29 Released: 2025-04-30 
• Deposition Author(s): Jenni, S., Herrmann, T., De Sautu, M., Harrison, S.C.
• Funding Organization(s): National Institutes of Health/National Cancer Institute (NIH/NCI)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.65 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Rotavirus structure

Jenni, S., Herrmann, T., De Sautu, M., Harrison, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 11-mer - A10B1 Local Symmetry: Cyclic - C5  (Explore in 3D)
Local Stoichiometry: Homo 10-mer - A10 

Local Symmetry: Cyclic - C5  (Explore in 3D)
Local Stoichiometry: Homo 10-mer - A10 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 1,159.54 kDa 
• Atom Count: 74,351 
• Modeled Residue Count: 9,103 
• Deposited Residue Count: 9,958 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Inner capsid protein VP2	A, B, C, D, E, F, G, H, I, J	887	Simian rotavirus A strain RRV	Mutation(s): 0
UniProt
Find proteins for B3F2X3 (Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3])) Explore B3F2X3  Go to UniProtKB:  B3F2X3

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-directed RNA polymerase	K [auth P]	1,088	Simian rotavirus A strain RRV	Mutation(s): 0  EC: 2.7.7.48
UniProt
Find proteins for B3F2X2 (Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3])) Explore B3F2X2  Go to UniProtKB:  B3F2X2

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.65 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21rc1_5127

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-04-30 
Deposition Author(s): Jenni, S., Herrmann, T., De Sautu, M., Harrison, S.C.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)	United States	R01 CA13202

Revision History  

• Version 1.0: 2025-04-30
  Type: Initial release