9C1L | pdb_00009c1l

Rhesus rotavirus (VP1 structure at 2.65 Angstrom resolution)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	Reovirus inner layer core protein p3	8094216	3001935	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Reovirus inner layer core protein p3	8094216	3001935	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Reovirus inner layer core protein p3	8094216	3001935	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Reovirus inner layer core protein p3	8094216	3001935	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Reovirus inner layer core protein p3	8094216	3001935	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Reovirus inner layer core protein p3	8094216	3001935	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Reovirus inner layer core protein p3	8094216	3001935	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Reovirus inner layer core protein p3	8094216	3001935	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Reovirus inner layer core protein p3	8094216	3001935	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Reovirus inner layer core protein p3	8094216	3001935	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
K [auth P]	PF12289	Rotavirus VP1 C-terminal domain (Rotavirus_VP1)	Rotavirus VP1 C-terminal domain	This domain is the C-terminal bracelet domain of the rotavirus VP1 RNA-directed RNA polymerase. It surrounds the exit tunnel for dsRNA produced by replication and for the RNA template for transcription [1].	Domain
K [auth P]	PF02123	Viral RNA-directed RNA-polymerase (RdRP_4)	Viral RNA-directed RNA-polymerase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
K [auth P]	RNA-directed RNA polymerase	RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA binding binding nucleic acid binding nucleoside phosphate binding nucleotide binding RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA binding binding nucleic acid binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process viral genome replication viral process viral life cycle	virion component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Inner capsid protein VP2	RNA binding binding nucleic acid binding	-	viral capsid icosahedral viral capsid virion component viral inner capsid viral nucleocapsid T=2 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
K [auth P]	IPR001795	RNA-directed RNA polymerase, luteovirus	Family
K [auth P]	IPR007097	RNA-directed RNA polymerase, reovirus	Domain
K [auth P]	IPR042032	Viral RNA-directed RNA polymerase, 4-helical domain	Homologous Superfamily
K [auth P]	IPR022071	Rotavirus VP1 RNA-directed RNA polymerase, C-terminal	Domain
K [auth P]	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR007779	Rotavirus VP2	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.