9C0L

FphH, Staphylococcus aureus fluorophosphonate-binding serine hydrolases H, apo crystal form 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.186 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


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Literature

Similar but Distinct-Biochemical Characterization of the Staphylococcus aureus Serine Hydrolases FphH and FphI.

Fellner, M.Randall, G.Bitac, I.R.C.G.Warrender, A.K.Sethi, A.Jelinek, R.Kass, I.

(2024) Proteins 

  • DOI: https://doi.org/10.1002/prot.26785
  • Primary Citation of Related Structures:  
    8G0N, 9C0L, 9C0M, 9C0N

  • PubMed Abstract: 

    Staphylococcus aureus is a major cause of infections like bacteremia, pneumonia, and endocarditis. These infections are often linked to the ability of S. aureus to form biofilms. Several S. aureus serine hydrolases have previously been identified to be active during biofilm-forming conditions. Here, we present the biochemical characterization of two of these enzymes-fluorophosphonate binding hydrolase H and I (FphH, FphI). Cryogenic and room-temperature X-ray crystallography, enzymatic substrate profiling, small-angle X-ray scattering analysis, and molecular dynamics simulations provide new insights into similarities and differences between these two hydrolase_4 domain family members. We discover that these enzymes share an overall fold, including a flexible lid or cap region above the active site, which can be seen to be mobile in solution. Differences in the active site pocket and lid residues differentiate them and explain speed differences in their carboxyesterase substrate profile toward small unbranched carbon chain ester molecules. The first analysis of FphI is also compared to our previous knowledge of FphH and its association to stress conditions. These results enable the future precise targeting of Fph serine hydrolase family members with a long-term goal to significantly improve the health and wellbeing of individuals and populations worldwide.


  • Organizational Affiliation

    Biochemistry Department, School of Biomedical Sciences, University of Otago, Dunedin, New Zealand.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Alpha/beta fold hydrolase249Staphylococcus aureus USA300-CA-263Mutation(s): 0 
Gene Names: est_2
EC: 3.1.1.1
UniProt
Find proteins for A0A0D6HZA6 (Staphylococcus aureus)
Explore A0A0D6HZA6 
Go to UniProtKB:  A0A0D6HZA6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0D6HZA6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.186 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 60.898α = 90
b = 60.898β = 90
c = 164.513γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data

  • Released Date: 2025-01-08 
  • Deposition Author(s): Fellner, M.

Funding OrganizationLocationGrant Number
Capability Build Funding - New Zealand Synchrotron Group LtdNew Zealand--

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-08
    Type: Initial release