8G0N

FphI, Staphylococcus aureus fluorophosphonate-binding serine hydrolases I, apo form

• PDB DOI: https://doi.org/10.2210/pdb8G0N/pdb

• Classification: HYDROLASE
• Organism(s): Staphylococcus aureus USA300-0114
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2023-01-31 Released: 2024-02-14 
• Deposition Author(s): Fellner, M.
• Funding Organization(s): Capability Build Funding - New Zealand Synchrotron Group Ltd

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.14 Å
• R-Value Free: 0.145 
• R-Value Work: 0.132 
• R-Value Observed: 0.132 

Literature

FphI, Staphylococcus aureus fluorophosphonate-binding serine hydrolases I, apo form

Fellner, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 27.77 kDa 
• Atom Count: 2,356 
• Modelled Residue Count: 242 
• Deposited Residue Count: 247 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fluorophosphonate-binding serine hydrolase I	A	247	Staphylococcus aureus USA300-0114	Mutation(s): 0  Gene Names: est_1
UniProt
Find proteins for X5DUZ9 (Staphylococcus aureus) Explore X5DUZ9  Go to UniProtKB:  X5DUZ9

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CL	D [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M
MG	B [auth A], C [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.14 Å
• R-Value Free: 0.145 
• R-Value Work: 0.132 
• R-Value Observed: 0.132 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.457	α = 90
b = 60.742	β = 90
c = 76.38	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-02-14 
Deposition Author(s): Fellner, M.

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Funding Organization	Location	Grant Number
Capability Build Funding - New Zealand Synchrotron Group Ltd	New Zealand	--

Revision History  

• Version 1.0: 2024-02-14
  Type: Initial release