9B3A | pdb_00009b3a

filament of type 1 KD-mxyl miniature tau macrocycle derived from 4R tauopathic fold


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Macrocyclic beta-arch peptides that mimic the structure and function of disease-associated tau folds.

Angera, I.J.Xu, X.Rajewski, B.H.Hallinan, G.I.Zhang, X.Ghetti, B.Vidal, R.Jiang, W.Del Valle, J.R.

(2025) Nat Chem 17: 865-874

  • DOI: https://doi.org/10.1038/s41557-025-01805-z
  • Primary Citation of Related Structures:  
    9B3A, 9DME

  • PubMed Abstract: 

    Tauopathies are a class of neurodegenerative disorders that feature tau protein aggregates in the brain. Misfolded tau has the capacity to seed the fibrillization of soluble tau, leading to the prion-like spread of aggregates. Within these filaments, tau protomers always exhibit a cross-β amyloid structure. However, distinct cross-β amyloid folds correlate with specific diseases. An understanding of how these conformations impact seeding activity remains elusive. Identifying the minimal epitopes required for transcellular propagation of tau aggregates represents a key step towards more relevant models of disease progression. Here we implement a diversity-oriented peptide macrocyclization approach towards miniature tau, or 'mini-tau', proteomimetics that can seed the aggregation of tau in engineered cells and primary neurons. Structural elucidation of one such seed-competent macrocycle reveals remarkable conformational congruence with core folds from patient-derived extracts of tau. The ability to impart β-arch form and function through peptide stapling has broad-ranging implications for the minimization and mimicry of pathological tau and other amyloid proteins that drive neurodegeneration.


  • Organizational Affiliation
    • Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, IN, USA.

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Microtubule-associated protein tau22Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P10636 (Homo sapiens)
Explore P10636 
Go to UniProtKB:  P10636
PHAROS:  P10636
GTEx:  ENSG00000186868 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP10636
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
SER-VAL-GLN-ILE-VAL-TYR-LYS7Homo sapiensMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
8VH
Query on 8VH

Download Ideal Coordinates CCD File 
BB [auth W]
DB [auth Y]
FA [auth A]
FB [auth a]
HA [auth C]
BB [auth W],
DB [auth Y],
FA [auth A],
FB [auth a],
HA [auth C],
HB [auth c],
JA [auth E],
LA [auth G],
NA [auth I],
PA [auth K],
RA [auth M],
TA [auth O],
VA [auth Q],
XA [auth S],
ZA [auth U]
1,3-dimethylbenzene
C8 H10
IVSZLXZYQVIEFR-UHFFFAOYSA-N
NH2
Query on NH2

Download Ideal Coordinates CCD File 
AB [auth W]
CB [auth Y]
EA [auth A]
EB [auth a]
GA [auth C]
AB [auth W],
CB [auth Y],
EA [auth A],
EB [auth a],
GA [auth C],
GB [auth c],
IA [auth E],
KA [auth G],
MA [auth I],
OA [auth K],
QA [auth M],
SA [auth O],
UA [auth Q],
WA [auth S],
YA [auth U]
AMINO GROUP
H2 N
QGZKDVFQNNGYKY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute on Aging (NIH/NIA)United StatesR01AG074570
National Science Foundation (NSF, United States)United StatesCHE2109008

Revision History  (Full details and data files)

  • Version 1.0: 2025-03-26
    Type: Initial release
  • Version 1.1: 2025-10-08
    Changes: Data collection, Database references