9A0F | pdb_00009a0f

Integrative model of the wild type yeast nuclear pore complex

Integrative structure models are generated using different types of input information, including varied experimental data, physical principles, statistical preferences, and other prior information.

PDB DOI: https://doi.org/10.2210/pdb9A0F/pdb

Organism(s): Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Mutation(s): No

Deposited: 2020-06-04 Released: 2020-08-28
Deposition Author(s): Vasileios Rantos, Matteo Allegretti, Christian E. Zimmerli, Florian Wilfling, Paolo Ronchi, Herman K.H. Fung, Chia-Wei Lee, Wim Hagen, Beata Turonova, Kai Karius, Mandy Boermel, Xiaojie Zhang, Christoph Mueller, Yannick Schwab, Julia Mahamid, Boris Pfander, Martin Beck, Jan Kosinski

Integrative Structure Snapshot

Multi-Scale: No
Multi-State: No
Ordered-State: No
Deposited Models: 1
Representative Model: 1

wwPDB ValidationFull ReportSummary Report

This is version 1.0 of the entry. See complete history.

Literature

In cell architecture of the nuclear pore and snapshots of its turnover

Matteo Allegretti, Christian E. Zimmerli, Vasileios Rantos, Florian Wilfling, Paolo Ronchi, Herman K.H. Fung, Chia-Wei Lee, Wim Hagen, Beata Turonova, Kai Karius, Mandy Boermel, Xiaojie Zhang, Christoph Mueller, Yannick Schwab, Julia Mahamid, Boris Pfander, Jan Kosinski, Martin Beck

(2020) Nature 0: 0-0

DOI: https://doi.org/10.1038/s41586-020-2670-5

Macromolecule Content

Total Structure Weight: 5,109.96 kDa
Atom Count: 202,813
Modeled Residue Count: 39,382
Deposited Residue Count: 39,382
Unique protein chains: 18

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nup133	K1, K2	1,157	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: NUP133
UniProt
Find proteins for P36161 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36161 Go to UniProtKB: P36161
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UniProt Group	P36161
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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Nup84	L1, L2	726	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: NUP84
UniProt
Find proteins for P52891 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P52891 Go to UniProtKB: P52891
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UniProt Group	P52891
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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Nup145c	M1, M2	712	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: NUP145 EC: 3.4.21
UniProt
Find proteins for P49687 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P49687 Go to UniProtKB: P49687
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UniProt Group	P49687
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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Sec13	N1, N2	297	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: SEC13
UniProt
Find proteins for Q04491 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q04491 Go to UniProtKB: Q04491
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UniProt Group	Q04491
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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Seh1	O1, O2	349	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: SEH1
UniProt
Find proteins for P53011 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53011 Go to UniProtKB: P53011
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UniProt Group	P53011
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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Nup85	P1, P2	744	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: NUP85
UniProt
Find proteins for P46673 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P46673 Go to UniProtKB: P46673
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UniProt Group	P46673
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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Nup120	R1, R2	1,037	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: NUP120
UniProt
Find proteins for P35729 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P35729 Go to UniProtKB: P35729
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UniProt Group	P35729
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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Dyn2	91, 92	92	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: DYN2
UniProt
Find proteins for Q02647 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q02647 Go to UniProtKB: Q02647
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UniProt Group	Q02647
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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
Nup82	W1, W2	713	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: NUP82
UniProt
Find proteins for P40368 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40368 Go to UniProtKB: P40368
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UniProt Group	P40368
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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Nup159	V1, V2	1,460	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: NUP159
UniProt
Find proteins for P40477 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40477 Go to UniProtKB: P40477
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UniProt Group	P40477
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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
Nsp1	J1, J2, J3, J4, J5 J1, J2, J3, J4, J5, J6	823	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: NSP1
UniProt
Find proteins for P14907 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P14907 Go to UniProtKB: P14907
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UniProt Group	P14907
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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
Nic96	A1, A2, A3, A4	839	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: NIC96
UniProt
Find proteins for P34077 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P34077 Go to UniProtKB: P34077
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UniProt Group	P34077
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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
Nup188	B1, B2	1,655	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: NUP188
UniProt
Find proteins for P52593 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P52593 Go to UniProtKB: P52593
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UniProt Group	P52593
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Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
Nup157	D1, D2	1,391	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: NUP157
UniProt
Find proteins for P40064 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40064 Go to UniProtKB: P40064
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UniProt Group	P40064
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Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
Nup57	H1, H2, H3, H4	541	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: NUP57
UniProt
Find proteins for P48837 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P48837 Go to UniProtKB: P48837
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UniProt Group	P48837
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Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
Nup49	I1, I2, I3, I4	472	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: NUP49
UniProt
Find proteins for Q02199 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q02199 Go to UniProtKB: Q02199
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UniProt Group	Q02199
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Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
Nup192	C1, C2	1,683	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: NUP192
UniProt
Find proteins for P47054 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P47054 Go to UniProtKB: P47054
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UniProt Group	P47054
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Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
Nup170	d1, d2	1,502	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0 Gene Names: NUP170
UniProt
Find proteins for P38181 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38181 Go to UniProtKB: P38181
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UniProt Group	P38181
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Reference Sequence