8UY7 | pdb_00008uy7

Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.93 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

P-type ATPase magnesium transporter MgtA acts as a dimer.

Zeinert, R.Zhou, F.Franco, P.Zoller, J.Madni, Z.K.Lessen, H.Aravind, L.Langer, J.D.Sodt, A.J.Storz, G.Matthies, D.

(2025) Nat Struct Mol Biol 32: 1633-1643

  • DOI: https://doi.org/10.1038/s41594-025-01593-7
  • Primary Citation of Related Structures:  
    8UY7, 8UY8, 8UY9, 8UYA, 8UYB, 8UYC

  • PubMed Abstract: 

    Magnesium (Mg 2+ ) uptake systems are present in all domains of life, consistent with the vital role of this ion. P-type ATPase Mg 2+ importers are required for bacterial growth when Mg 2+ is limiting or during pathogenesis. However, insights into their mechanisms of action are missing. Here we solved the cryo-EM structure of the Mg 2+ transporter MgtA from Escherichia coli. We obtained high-resolution structures of both homodimeric (2.9 Å) and monomeric (3.6 Å) forms. The dimer structure is formed by multiple contacts between residues in adjacent soluble N and P subdomains. Our structures revealed an ion, assigned as Mg 2+ , in the transmembrane segment. Moreover, we detected two cytoplasmic ion-binding sites and determined the structure of the N-terminal tail. Sequence conservation, mutagenesis and ATPase assays indicate dimerization, the ion-binding sites and the N-terminal tail facilitate cation transport or serve regulatory roles.


  • Organizational Affiliation
    • Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Magnesium-transporting ATPase, P-type 1
A, B
904Escherichia coli K-12Mutation(s): 0 
Gene Names: mgtA
EC: 7.2.2.14
Membrane Entity: Yes 
UniProt
Find proteins for P0ABB8 (Escherichia coli (strain K12))
Explore P0ABB8 
Go to UniProtKB:  P0ABB8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0ABB8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.93 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTCoot0.9.8.7
MODEL REFINEMENTPHENIX1.20.1-4487
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/Eunice Kennedy Shriver National Institute of Child Health & Human Development (NIH/NICHD)United StatesZIA HD008998
National Institutes of Health/Eunice Kennedy Shriver National Institute of Child Health & Human Development (NIH/NICHD)United StatesZIA HD008855
National Institutes of Health/Eunice Kennedy Shriver National Institute of Child Health & Human Development (NIH/NICHD)United StatesZIA HD008955
National Institutes of Health/National Library of Medicine (NIH/NLM)United StatesLM594244
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States1FI2GM146628-01
German Research Foundation (DFG)Germany3542/1-1

Revision History  (Full details and data files)

  • Version 1.0: 2024-11-27
    Type: Initial release
  • Version 1.1: 2025-07-09
    Changes: Data collection, Database references
  • Version 1.2: 2025-10-01
    Changes: Data collection, Database references