8T7A | pdb_00008t7a

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

(2023) J Virol 97: e0092923-e0092923

PubMed Abstract:
Respiratory syncytial virus (RSV) is the leading cause of bronchiolitis and pneumonia in infants, infecting all children by age 5. RSV also causes substantial morbidity and mortality in older adults, and a vaccine for older adults based on a prefusion-stabilized form of the viral F glycoprotein was recently approved by the FDA. Here, we investigate a set of antibodies that belong to the same public clonotype and were isolated from individuals vaccinated with a prefusion-stabilized RSV F protein. Our results reveal that these antibodies are highly potent and recognize a previously uncharacterized antigenic site on the prefusion F protein. Vaccination with prefusion RSV F proteins appears to boost the elicitation of these neutralizing antibodies, which are not commonly elicited by natural infection.

Organizational Affiliation

Department of Molecular Biosciences, The University of Texas at Austin , Austin, Texas, USA.

Macromolecule Content

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fusion glycoprotein F2	A, C [auth B], E [auth C]	84	Respiratory syncytial virus A2	Mutation(s): 0
UniProt
Find proteins for P12568 (Human respiratory syncytial virus) Explore P12568 Go to UniProtKB: P12568
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P12568
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Fusion glycoprotein F1	B [auth a], D [auth b], F [auth c]	436	Respiratory syncytial virus A2	Mutation(s): 0
UniProt
Find proteins for P12568 (Human respiratory syncytial virus) Explore P12568 Go to UniProtKB: P12568
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P12568
Glycosylation
Glycosylation Sites: 1	Glycosylation Focus chain B [auth a] Focus chain D [auth b] Focus chain F [auth c]
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
2.4K Fab Heavy Chain	G [auth D], I [auth F], K [auth H]	125	Homo sapiens	Mutation(s): 0

Find similar proteins by:

| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
2.4K Fab Light Chain	H [auth E], J [auth G], L [auth I]	113	Homo sapiens	Mutation(s): 0

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download:Ideal Coordinates CCD File SDF format, chain M [auth a] SDF format, chain O [auth c] SDF format, chain N [auth b] MOL2 format, chain M [auth a] MOL2 format, chain O [auth c] MOL2 format, chain N [auth b] mmCIF format, chain M [auth a] mmCIF format, chain O [auth c] mmCIF format, chain N [auth b]	M [auth a], N [auth b], O [auth c]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain M [auth a] Focus chain N [auth b] Focus chain O [auth c] Interactions & Density Focus chain M [auth a] Focus chain N [auth b] Focus chain O [auth c]