Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4
Lewis, A.J.O., Hegde, R.S.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein transport protein Sec61 subunit alpha isoform 1 | A [auth 1] | 476 | Canis lupus familiaris | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P38377 (Canis lupus familiaris) Explore P38377  Go to UniProtKB:  P38377 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P38377 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein transport protein Sec61 subunit beta | B [auth 2] | 96 | Canis lupus familiaris | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P60467 (Canis lupus familiaris) Explore P60467  Go to UniProtKB:  P60467 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60467 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein transport protein Sec61 subunit gamma | C [auth 3] | 68 | Canis lupus familiaris | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P60058 (Canis lupus familiaris) Explore P60058  Go to UniProtKB:  P60058 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60058 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Stress-associated endoplasmic reticulum protein | D [auth 4] | 66 | Canis lupus familiaris | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A8C0RGL8 (Canis lupus familiaris) Explore A0A8C0RGL8  Go to UniProtKB:  A0A8C0RGL8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A8C0RGL8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribosomal protein L8 | E [auth A] | 257 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1TT27 (Oryctolagus cuniculus) Explore G1TT27  Go to UniProtKB:  G1TT27 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1TT27 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Nascent chain | F [auth B] | 229 | Bos taurus | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL4 | G [auth C] | 425 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A5F9C3C5 (Oryctolagus cuniculus) Explore A0A5F9C3C5  Go to UniProtKB:  A0A5F9C3C5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A5F9C3C5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribosomal_L18_c domain-containing protein | H [auth D] | 297 | Oryctolagus cuniculus | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L6 | I [auth E] | 291 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1SKF7 (Oryctolagus cuniculus) Explore G1SKF7  Go to UniProtKB:  G1SKF7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1SKF7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribosomal Protein uL30 | J [auth F] | 247 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1TUB1 (Oryctolagus cuniculus) Explore G1TUB1  Go to UniProtKB:  G1TUB1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1TUB1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L7a | K [auth G] | 319 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1STW0 (Oryctolagus cuniculus) Explore G1STW0  Go to UniProtKB:  G1STW0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1STW0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L9 | L [auth H] | 192 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1SWI6 (Oryctolagus cuniculus) Explore G1SWI6  Go to UniProtKB:  G1SWI6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1SWI6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L10 | M [auth I] | 214 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for B7NZQ2 (Oryctolagus cuniculus) Explore B7NZQ2  Go to UniProtKB:  B7NZQ2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B7NZQ2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L11 | N [auth J] | 178 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1TUB8 (Oryctolagus cuniculus) Explore G1TUB8  Go to UniProtKB:  G1TUB8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1TUB8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L13 | P [auth L] | 211 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1TPV0 (Oryctolagus cuniculus) Explore G1TPV0  Go to UniProtKB:  G1TPV0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1TPV0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 17 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L14 | Q [auth M] | 218 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1SZ12 (Oryctolagus cuniculus) Explore G1SZ12  Go to UniProtKB:  G1SZ12 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1SZ12 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 18 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribosomal protein L15 | R [auth N] | 204 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1T0C1 (Oryctolagus cuniculus) Explore G1T0C1  Go to UniProtKB:  G1T0C1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1T0C1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 19 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L13 | S [auth O] | 203 | Oryctolagus cuniculus | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 20 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
uL22 | T [auth P] | 184 | Oryctolagus cuniculus | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 21 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribosomal protein L26 | U [auth Q] | 187 | Oryctolagus cuniculus | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 22 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribosomal protein L19 | V [auth R] | 196 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1TJR3 (Oryctolagus cuniculus) Explore G1TJR3  Go to UniProtKB:  G1TJR3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1TJR3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 23 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L18a | W [auth S] | 176 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A287APR1 (Sus scrofa) Explore A0A287APR1  Go to UniProtKB:  A0A287APR1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A287APR1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 24 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L21 | X [auth T] | 160 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1SHQ2 (Oryctolagus cuniculus) Explore G1SHQ2  Go to UniProtKB:  G1SHQ2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1SHQ2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 25 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribosomal protein L22 | Y [auth U] | 128 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1TSG1 (Oryctolagus cuniculus) Explore G1TSG1  Go to UniProtKB:  G1TSG1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1TSG1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 26 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribosomal protein L23 | Z [auth V] | 140 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1T6D1 (Oryctolagus cuniculus) Explore G1T6D1  Go to UniProtKB:  G1T6D1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1T6D1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 27 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribosomal protein L24 | AA [auth W] | 157 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1SE28 (Oryctolagus cuniculus) Explore G1SE28  Go to UniProtKB:  G1SE28 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1SE28 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 28 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribosomal_L23eN domain-containing protein | BA [auth X] | 156 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1SE76 (Oryctolagus cuniculus) Explore G1SE76  Go to UniProtKB:  G1SE76 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1SE76 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 29 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribosomal protein L26 | CA [auth Y] | 145 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1SQH0 (Oryctolagus cuniculus) Explore G1SQH0  Go to UniProtKB:  G1SQH0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1SQH0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 30 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L27 | DA [auth Z] | 136 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1TXF6 (Oryctolagus cuniculus) Explore G1TXF6  Go to UniProtKB:  G1TXF6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1TXF6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 31 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L27a | EA [auth a] | 148 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1SNY0 (Oryctolagus cuniculus) Explore G1SNY0  Go to UniProtKB:  G1SNY0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1SNY0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 32 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L29 | FA [auth b] | 226 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1SGR6 (Oryctolagus cuniculus) Explore G1SGR6  Go to UniProtKB:  G1SGR6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1SGR6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 33 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL30 | GA [auth c] | 115 | Oryctolagus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1TDL2 (Oryctolagus cuniculus) Explore G1TDL2  Go to UniProtKB:  G1TDL2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1TDL2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 34 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L31 | HA [auth d] | 125 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1SHG0 (Oryctolagus cuniculus) Explore G1SHG0  Go to UniProtKB:  G1SHG0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1SHG0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 35 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribosomal protein L32 | IA [auth e] | 135 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1TUN8 (Oryctolagus cuniculus) Explore G1TUN8  Go to UniProtKB:  G1TUN8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1TUN8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 36 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L35a | JA [auth f] | 110 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1SF08 (Oryctolagus cuniculus) Explore G1SF08  Go to UniProtKB:  G1SF08 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1SF08 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 37 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L34 | KA [auth g] | 116 | Oryctolagus cuniculus | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 38 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L35 | LA [auth h] | 123 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1SIT5 (Oryctolagus cuniculus) Explore G1SIT5  Go to UniProtKB:  G1SIT5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1SIT5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 39 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L36 | MA [auth i] | 105 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1TTQ5 (Oryctolagus cuniculus) Explore G1TTQ5  Go to UniProtKB:  G1TTQ5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1TTQ5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 40 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribosomal protein L37 | NA [auth j] | 97 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for U3KPD5 (Oryctolagus cuniculus) Explore U3KPD5  Go to UniProtKB:  U3KPD5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | U3KPD5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 41 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L38 | OA [auth k] | 70 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1U001 (Oryctolagus cuniculus) Explore G1U001  Go to UniProtKB:  G1U001 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1U001 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 42 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L39-like | PA [auth l] | 51 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1TTN1 (Oryctolagus cuniculus) Explore G1TTN1  Go to UniProtKB:  G1TTN1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1TTN1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 43 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
eL40 | QA [auth m] | 102 | Oryctolagus cuniculus | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 44 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L41 | RA [auth n] | 25 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A087WNH4 (Oryctolagus cuniculus) Explore A0A087WNH4  Go to UniProtKB:  A0A087WNH4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A087WNH4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 45 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L36a-like | SA [auth o] | 106 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1T040 (Oryctolagus cuniculus) Explore G1T040  Go to UniProtKB:  G1T040 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1T040 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 46 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L37a | TA [auth p] | 92 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1SY53 (Oryctolagus cuniculus) Explore G1SY53  Go to UniProtKB:  G1SY53 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1SY53 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 48 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
60S ribosomal protein L28 | VA [auth r] | 137 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1U7L1 (Oryctolagus cuniculus) Explore G1U7L1  Go to UniProtKB:  G1U7L1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1U7L1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 51 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribosomal protein L3 | YA [auth w] | 403 | Oryctolagus cuniculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for G1TL06 (Oryctolagus cuniculus) Explore G1TL06  Go to UniProtKB:  G1TL06 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G1TL06 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
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Molecule | Chains | Length | Organism | Image | |
28S rRNA | O [auth K] | 3,543 | Oryctolagus cuniculus | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 47 | |||||
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Molecule | Chains | Length | Organism | Image | |
P-site tRNA | UA [auth q] | 76 | Sus scrofa | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 49 | |||||
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Molecule | Chains | Length | Organism | Image | |
5S rRNA | WA [auth u] | 120 | Oryctolagus cuniculus | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 50 | |||||
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Molecule | Chains | Length | Organism | Image | |
5.8S rRNA | XA [auth v] | 156 | Oryctolagus cuniculus | ||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | AJ [auth o], BJ [auth p], WI [auth g], YI [auth j], ZI [auth m] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG Query on MG | AB [auth K] AC [auth K] AD [auth K] AE [auth K] AF [auth K] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | PHENIX | 1.20.1 |
Funding Organization | Location | Grant Number |
---|---|---|
Medical Research Council (MRC, United Kingdom) | United Kingdom | MC_UP_A022_1007 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R01 GM130051 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R01 GM086487 |