Download MendeleyStructure of the C-terminal domain of the Bdellovibrio bacteriovorus Bd2133 fibre
Caulton, S.G., Lovering, A.L.To be published.
8OK3
Structure of the C-terminal domain of the Bdellovibrio bacteriovorus Bd2133 fibre
- PDB DOI: https://doi.org/10.2210/pdb8OK3/pdb
- Classification: CELL ADHESION
- Organism(s): Bdellovibrio bacteriovorus HD100
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2023-03-27 Released: 2023-10-25
- Funding Organization(s): Wellcome Trust
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.159
- R-Value Work: 0.150
- R-Value Observed: 0.151
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Bd2133 | 125 | Bdellovibrio bacteriovorus HD100 | Mutation(s): 0 Gene Names: Bd2133 |  | |
UniProt | |||||
Find proteins for Q6ML84 (Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIMB 9529 / HD100)) Explore Q6ML84 Go to UniProtKB: Q6ML84 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6ML84 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| CL Query on CL | D [auth A], E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.159
- R-Value Work: 0.150
- R-Value Observed: 0.151
- Space Group: P 21 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 68.76 | α = 90 |
| b = 68.76 | β = 90 |
| c = 68.76 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-10-25 Deposition Author(s): Caulton, S.G., Lovering, A.L.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Wellcome Trust | United Kingdom | 209437/Z/17/Z |
Revision History (Full details and data files)
- Version 1.0: 2023-10-25
Type: Initial release
