8OJN

Structure of the C-terminal beta helix domain of the Bdellovibrio bacteriovorus Bd3182 fibre

PDB DOI: https://doi.org/10.2210/pdb8OJN/pdb

Classification: CELL ADHESION
Organism(s): Bdellovibrio bacteriovorus HD100
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-03-24 Released: 2023-10-25
Deposition Author(s): Caulton, S.G., Lovering, A.L.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.51 Å
R-Value Free: 0.248
R-Value Work: 0.194
R-Value Observed: 0.196

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of the C-terminal beta helix domain of the Bdellovibrio bacteriovorus Bd3182 fibre

Caulton, S.G., Lovering, A.L.

To be published.

Macromolecule Content

Total Structure Weight: 93.11 kDa
Atom Count: 5,837
Modelled Residue Count: 804
Deposited Residue Count: 912
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cell wall surface anchor family protein	A [auth C] B [auth E] C [auth D] D [auth F] E [auth B] A [auth C], B [auth E], C [auth D], D [auth F], E [auth B], F [auth A]	152	Bdellovibrio bacteriovorus HD100	Mutation(s): 0 Gene Names: Bd3182
UniProt
Find proteins for Q6MIH5 (Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIMB 9529 / HD100)) Explore Q6MIH5 Go to UniProtKB: Q6MIH5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q6MIH5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.51 Å
R-Value Free: 0.248
R-Value Work: 0.194
R-Value Observed: 0.196
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 93.219	α = 90
b = 48.133	β = 96.69
c = 95.595	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
autoPROC	data processing
PHASER	phasing
autoPROC	data reduction
autoPROC	data scaling

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-10-25

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	209437/Z/17/Z

Revision History (Full details and data files)

Version 1.0: 2023-10-25
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.