8OKS

Crystal structure of Bdellovibrio bacteriovorus Bd2740 C-terminal domain

PDB DOI: https://doi.org/10.2210/pdb8OKS/pdb

Classification: CELL ADHESION
Organism(s): Bdellovibrio bacteriovorus HD100
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-03-29 Released: 2023-10-25
Deposition Author(s): Caulton, S.G., Lovering, A.L.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.09 Å
R-Value Free: 0.262
R-Value Work: 0.227
R-Value Observed: 0.228

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Title to be confirmed

Caulton, S.G., Lovering, A.L.

To be published.

Macromolecule Content

Total Structure Weight: 37.85 kDa
Atom Count: 2,475
Modelled Residue Count: 331
Deposited Residue Count: 354
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptidase S74 domain-containing protein	A [auth B], B [auth C], C [auth A]	118	Bdellovibrio bacteriovorus HD100	Mutation(s): 0 Gene Names: Bd2740
UniProt
Find proteins for Q6MJN2 (Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIMB 9529 / HD100)) Explore Q6MJN2 Go to UniProtKB: Q6MJN2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q6MJN2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.09 Å
R-Value Free: 0.262
R-Value Work: 0.227
R-Value Observed: 0.228
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.084	α = 90
b = 69.329	β = 90
c = 87.427	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
autoPROC	data reduction
autoPROC	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-10-25

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	209437/Z/17/Z

Revision History (Full details and data files)

Version 1.0: 2023-10-25
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.