8FVI

Human APOBEC3H bound to HIV-1 Vif in complex with CBF-beta, ELOB, ELOC, and CUL5

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.24 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Structural basis of HIV-1 Vif-mediated E3 ligase targeting of host APOBEC3H

Ito, F., Alvarez-Cabrera, A.L., Kim, K., Zhou, Z.H., Chen, X.S.

(2023) Nat Commun 14: 5241


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Core-binding factor subunit betaA [auth 0]157Homo sapiensMutation(s): 0 
Gene Names: CBFB
UniProt & NIH Common Fund Data Resources
Find proteins for Q13951 (Homo sapiens)
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PHAROS:  Q13951
GTEx:  ENSG00000067955 
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UniProt GroupQ13951
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Virion infectivity factorB [auth 1]178Human immunodeficiency virus 1Mutation(s): 0 
Gene Names: vif
UniProt
Find proteins for P12504 (Human immunodeficiency virus type 1 group M subtype B (isolate NY5))
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UniProt GroupP12504
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
DNA dC->dU-editing enzyme APOBEC-3HC [auth A]189Homo sapiensMutation(s): 2 
Gene Names: APOBEC3H
EC: 3.5.4.38
UniProt & NIH Common Fund Data Resources
Find proteins for Q6NTF7 (Homo sapiens)
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PHAROS:  Q6NTF7
GTEx:  ENSG00000100298 
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UniProt GroupQ6NTF7
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Cullin 5F [auth x]314Homo sapiensMutation(s): 0 
Gene Names: CUL5
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Find proteins for Q93034 (Homo sapiens)
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PHAROS:  Q93034
GTEx:  ENSG00000166266 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Elongin-BG [auth y]102Homo sapiensMutation(s): 0 
Gene Names: ELOB, TCEB2
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Find proteins for Q15370 (Homo sapiens)
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PHAROS:  Q15370
GTEx:  ENSG00000103363 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Elongin-CH [auth z]96Homo sapiensMutation(s): 0 
Gene Names: ELOC, TCEB1
UniProt & NIH Common Fund Data Resources
Find proteins for Q15369 (Homo sapiens)
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PHAROS:  Q15369
GTEx:  ENSG00000154582 
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Entity ID: 4
MoleculeChains LengthOrganismImage
RNA(5'-R(AP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')D [auth B]10Escherichia coli
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Entity ID: 5
MoleculeChains LengthOrganismImage
RNA(5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')E [auth C]9Escherichia coli
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.24 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01AI150524

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-06
    Type: Initial release