Structural basis of HIV-1 Vif-mediated E3 ligase targeting of host APOBEC3H
Ito, F., Alvarez-Cabrera, A.L., Kim, K., Zhou, Z.H., Chen, X.S.(2023) Nat Commun 14: 5241
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
(2023) Nat Commun 14: 5241
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Core-binding factor subunit beta | A [auth 0] | 157 | Homo sapiens | Mutation(s): 0  Gene Names: CBFB | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q13951 (Homo sapiens) Explore Q13951  Go to UniProtKB:  Q13951 | |||||
PHAROS:  Q13951 GTEx:  ENSG00000067955  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q13951 | ||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Virion infectivity factor | B [auth 1] | 178 | Human immunodeficiency virus 1 | Mutation(s): 0  Gene Names: vif | |
UniProt | |||||
Find proteins for P12504 (Human immunodeficiency virus type 1 group M subtype B (isolate NY5)) Explore P12504  Go to UniProtKB:  P12504 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P12504 | ||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA dC->dU-editing enzyme APOBEC-3H | C [auth A] | 189 | Homo sapiens | Mutation(s): 2  Gene Names: APOBEC3H EC: 3.5.4.38 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q6NTF7 (Homo sapiens) Explore Q6NTF7  Go to UniProtKB:  Q6NTF7 | |||||
PHAROS:  Q6NTF7 GTEx:  ENSG00000100298  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6NTF7 | ||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cullin 5 | F [auth x] | 314 | Homo sapiens | Mutation(s): 0  Gene Names: CUL5 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q93034 (Homo sapiens) Explore Q93034  Go to UniProtKB:  Q93034 | |||||
PHAROS:  Q93034 GTEx:  ENSG00000166266  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q93034 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Elongin-B | G [auth y] | 102 | Homo sapiens | Mutation(s): 0  Gene Names: ELOB, TCEB2 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15370 (Homo sapiens) Explore Q15370  Go to UniProtKB:  Q15370 | |||||
PHAROS:  Q15370 GTEx:  ENSG00000103363  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q15370 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Elongin-C | H [auth z] | 96 | Homo sapiens | Mutation(s): 0  Gene Names: ELOC, TCEB1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15369 (Homo sapiens) Explore Q15369  Go to UniProtKB:  Q15369 | |||||
PHAROS:  Q15369 GTEx:  ENSG00000154582  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q15369 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 4 | |||||
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Molecule | Chains | Length | Organism | Image | |
RNA(5'-R(AP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | D [auth B] | 10 | Escherichia coli | ||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 5 | |||||
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Molecule | Chains | Length | Organism | Image | |
RNA(5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | E [auth C] | 9 | Escherichia coli | ||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | I [auth 1], J [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Task | Software Package | Version |
---|---|---|
RECONSTRUCTION | cryoSPARC |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | R01AI150524 |