8EQB

FAM46C/BCCIPalpha/Nanobody complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Inhibition of FAM46/TENT5 activity by BCCIP alpha adopting a unique fold.

Liu, S.Chen, H.Yin, Y.Lu, D.Gao, G.Li, J.Bai, X.C.Zhang, X.

(2023) Sci Adv 9: eadf5583-eadf5583

  • DOI: https://doi.org/10.1126/sciadv.adf5583
  • Primary Citation of Related Structures:  
    8EQB, 8EXE, 8EXF

  • PubMed Abstract: 

    The FAM46 (also known as TENT5) proteins are noncanonical poly(A) polymerases (PAPs) implicated in regulating RNA stability. The regulatory mechanisms of FAM46 are poorly understood. Here, we report that the nuclear protein BCCIPα, but not the alternatively spliced isoform BCCIPβ, binds FAM46 and inhibits their PAP activity. Unexpectedly, our structures of the FAM46A/BCCIPα and FAM46C/BCCIPα complexes show that, despite sharing most of the sequence and differing only at the C-terminal portion, BCCIPα adopts a unique structure completely different from BCCIPβ. The distinct C-terminal segment of BCCIPα supports the adoption of the unique fold but does not directly interact with FAM46. The β sheets in BCCIPα and FAM46 pack side by side to form an extended β sheet. A helix-loop-helix segment in BCCIPα inserts into the active site cleft of FAM46, thereby inhibiting the PAP activity. Our results together show that the unique fold of BCCIPα underlies its interaction with and functional regulation of FAM46.


  • Organizational Affiliation

    Department of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Synthetic nanobody 1
A, D, G, J
125Lama glamaMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Terminal nucleotidyltransferase 5C
B, E, H, K
224Homo sapiensMutation(s): 1 
Gene Names: TENT5CFAM46C
EC: 2.7.7.19
UniProt & NIH Common Fund Data Resources
Find proteins for Q5VWP2 (Homo sapiens)
Explore Q5VWP2 
Go to UniProtKB:  Q5VWP2
PHAROS:  Q5VWP2
GTEx:  ENSG00000183508 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5VWP2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 2 of BRCA2 and CDKN1A-interacting protein
C, F, I, L
254Homo sapiensMutation(s): 0 
Gene Names: BCCIPTOK1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P287 (Homo sapiens)
Explore Q9P287 
Go to UniProtKB:  Q9P287
PHAROS:  Q9P287
GTEx:  ENSG00000107949 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9P287
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesR01CA220283
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM143158
Welch FoundationUnited StatesI-1702
Welch FoundationUnited StatesI-1944

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-15
    Type: Initial release
  • Version 1.1: 2023-04-26
    Changes: Database references