8EM5

Mycobacterium thermoresistible MmpS5

PDB DOI: https://doi.org/10.2210/pdb8EM5/pdb

Classification: PROTEIN BINDING
Organism(s): Mycolicibacterium thermoresistibile
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-09-26 Released: 2023-09-27
Deposition Author(s): Cuthbert, B.J., Goulding, C.W.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free: 0.194
R-Value Work: 0.161
R-Value Observed: 0.165

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of Mycobacterium thermoresistible MmpS5

Cuthbert, B.J., Goulding, C.W.

To be published.

Macromolecule Content

Total Structure Weight: 72.33 kDa
Atom Count: 4,986
Modelled Residue Count: 552
Deposited Residue Count: 618
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MmpS5	A, B, C, D, E A, B, C, D, E, F	103	Mycolicibacterium thermoresistibile	Mutation(s): 0 Gene Names: KEK_05752
UniProt
Find proteins for G7CDU2 (Mycolicibacterium thermoresistibile (strain ATCC 19527 / DSM 44167 / CIP 105390 / JCM 6362 / NCTC 10409 / 316)) Explore G7CDU2 Go to UniProtKB: G7CDU2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	G7CDU2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
12P Query on 12P Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain GA [auth E] SDF format, chain O [auth B] SDF format, chain Q [auth B] SDF format, chain S [auth C] SDF format, chain T [auth C] SDF format, chain X [auth D] MOL2 format, chain G [auth A] MOL2 format, chain GA [auth E] MOL2 format, chain O [auth B] MOL2 format, chain Q [auth B] MOL2 format, chain S [auth C] MOL2 format, chain T [auth C] MOL2 format, chain X [auth D]	G [auth A] GA [auth E] O [auth B] Q [auth B] S [auth C] G [auth A], GA [auth E], O [auth B], Q [auth B], S [auth C], T [auth C], X [auth D]	DODECAETHYLENE GLYCOL C₂₄ H₅₀ O₁₃ WRZXKWFJEFFURH-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Focus chain GA [auth E] Focus chain O [auth B] Focus chain Q [auth B] Focus chain S [auth C] Focus chain T [auth C] Focus chain X [auth D] Interactions & Density Focus chain G [auth A] Focus chain GA [auth E] Focus chain O [auth B] Focus chain Q [auth B] Focus chain S [auth C] Focus chain T [auth C] Focus chain X [auth D]
1PE Query on 1PE Download Ideal Coordinates CCD File SDF format, chain K [auth A] MOL2 format, chain K [auth A]	K [auth A]	PENTAETHYLENE GLYCOL C₁₀ H₂₂ O₆ JLFNLZLINWHATN-UHFFFAOYSA-N		Interactions Focus chain K [auth A] Interactions & Density Focus chain K [auth A]
IOD Query on IOD Download Ideal Coordinates CCD File SDF format, chain AA [auth D] SDF format, chain IA [auth F] SDF format, chain JA [auth F] SDF format, chain KA [auth F] SDF format, chain LA [auth F] SDF format, chain U [auth C] SDF format, chain V [auth C] SDF format, chain Z [auth D] MOL2 format, chain AA [auth D] MOL2 format, chain IA [auth F] MOL2 format, chain JA [auth F] MOL2 format, chain KA [auth F] MOL2 format, chain LA [auth F] MOL2 format, chain U [auth C] MOL2 format, chain V [auth C] MOL2 format, chain Z [auth D]	AA [auth D] IA [auth F] JA [auth F] KA [auth F] LA [auth F] AA [auth D], IA [auth F], JA [auth F], KA [auth F], LA [auth F], U [auth C], V [auth C], Z [auth D]	IODIDE ION I XMBWDFGMSWQBCA-UHFFFAOYSA-M		Interactions Focus chain AA [auth D] Focus chain IA [auth F] Focus chain JA [auth F] Focus chain KA [auth F] Focus chain LA [auth F] Focus chain U [auth C] Focus chain V [auth C] Focus chain Z [auth D] Interactions & Density Focus chain AA [auth D] Focus chain IA [auth F] Focus chain JA [auth F] Focus chain KA [auth F] Focus chain LA [auth F] Focus chain U [auth C] Focus chain V [auth C] Focus chain Z [auth D]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain BA [auth E] SDF format, chain CA [auth E] SDF format, chain DA [auth E] SDF format, chain EA [auth E] SDF format, chain FA [auth E] SDF format, chain H [auth A] SDF format, chain HA [auth F] SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain L [auth A] SDF format, chain M [auth A] SDF format, chain N [auth B] SDF format, chain P [auth B] SDF format, chain R [auth C] SDF format, chain W [auth D] SDF format, chain Y [auth D] MOL2 format, chain BA [auth E] MOL2 format, chain CA [auth E] MOL2 format, chain DA [auth E] MOL2 format, chain EA [auth E] MOL2 format, chain FA [auth E] MOL2 format, chain H [auth A] MOL2 format, chain HA [auth F] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain L [auth A] MOL2 format, chain M [auth A] MOL2 format, chain N [auth B] MOL2 format, chain P [auth B] MOL2 format, chain R [auth C] MOL2 format, chain W [auth D] MOL2 format, chain Y [auth D]	BA [auth E] CA [auth E] DA [auth E] EA [auth E] FA [auth E] BA [auth E], CA [auth E], DA [auth E], EA [auth E], FA [auth E], H [auth A], HA [auth F], I [auth A], J [auth A], L [auth A], M [auth A], N [auth B], P [auth B], R [auth C], W [auth D], Y [auth D]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain BA [auth E] Focus chain CA [auth E] Focus chain DA [auth E] Focus chain EA [auth E] Focus chain FA [auth E] Focus chain H [auth A] Focus chain HA [auth F] Focus chain I [auth A] Focus chain J [auth A] Focus chain L [auth A] Focus chain M [auth A] Focus chain N [auth B] Focus chain P [auth B] Focus chain R [auth C] Focus chain W [auth D] Focus chain Y [auth D] Interactions & Density Focus chain BA [auth E] Focus chain CA [auth E] Focus chain DA [auth E] Focus chain EA [auth E] Focus chain FA [auth E] Focus chain H [auth A] Focus chain HA [auth F] Focus chain I [auth A] Focus chain J [auth A] Focus chain L [auth A] Focus chain M [auth A] Focus chain N [auth B] Focus chain P [auth B] Focus chain R [auth C] Focus chain W [auth D] Focus chain Y [auth D]