Download MendeleyFOXK1-ELF1_heterodimer bound to DNA
Morgunova, E., Popov, A., Yin, Y., Taipale, J.To be published.
8BZM
FOXK1-ELF1-heterodimer bound to DNA
- PDB DOI: https://doi.org/10.2210/pdb8BZM/pdb
- NAKB: 8BZM
- Classification: TRANSCRIPTION
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-12-15 Released: 2023-12-27
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.69 Å
- R-Value Free: 0.324
- R-Value Work: 0.271
- R-Value Observed: 0.274
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Forkhead box protein K1 | B [auth A], C [auth E], G [auth I], H [auth J] | 95 | Homo sapiens | Mutation(s): 0 Gene Names: FOXK1, MNF |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P85037 (Homo sapiens) Explore P85037 Go to UniProtKB: P85037 | |||||
PHAROS: P85037 GTEx: ENSG00000164916 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P85037 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ETS-related transcription factor Elf-1 | I [auth B], J [auth H] | 89 | Homo sapiens | Mutation(s): 0 Gene Names: ELF1 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P32519 (Homo sapiens) Explore P32519 Go to UniProtKB: P32519 | |||||
PHAROS: P32519 GTEx: ENSG00000120690 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P32519 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA | A [auth G], F [auth D] | 17 | Homo sapiens |  | |
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA | D [auth F], E [auth C] | 18 | Homo sapiens |  | |
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | K [auth F] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.69 Å
- R-Value Free: 0.324
- R-Value Work: 0.271
- R-Value Observed: 0.274
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 66.181 | α = 90 |
| b = 105.868 | β = 112.94 |
| c = 68.194 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-12-27 Deposition Author(s): Morgunova, E., Popov, A., Yin, Y., Taipale, J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-12-27
Type: Initial release
