5EG0

HOXB13-MEIS1 heterodimer bound to DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.322 
  • R-Value Work: 0.285 
  • R-Value Observed: 0.288 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Molecular basis of recognition of two distinct DNA sequences by a single transcription factor

Morgunova, E.Yin, Y.Jolma, A.Popov, A.Taipale, J.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Homeobox protein Meis2A57Homo sapiensMutation(s): 0 
Gene Names: MEIS2MRG1
UniProt & NIH Common Fund Data Resources
Find proteins for O14770 (Homo sapiens)
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Go to UniProtKB:  O14770
PHAROS:  O14770
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  • Reference Sequence
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Homeobox protein Hox-B13D [auth B]61Homo sapiensMutation(s): 0 
Gene Names: HOXB13
UniProt & NIH Common Fund Data Resources
Find proteins for Q92826 (Homo sapiens)
Explore Q92826 
Go to UniProtKB:  Q92826
PHAROS:  Q92826
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(P*GP*TP*TP*GP*AP*CP*AP*GP*TP*TP*TP*TP*AP*CP*GP*AP*GP*G)-3')B [auth D]18synthetic construct
    Protein Feature View
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    • Reference Sequence
    • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 3
      MoleculeChainsLengthOrganismImage
      DNA (5'-D(*CP*CP*TP*CP*GP*TP*AP*AP*AP*AP*CP*TP*GP*TP*CP*AP*AP*C)-3')C [auth E]18synthetic construct
      Protein Feature View
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      • Reference Sequence
      Experimental Data & Validation

      Experimental Data

      • Method: X-RAY DIFFRACTION
      • Resolution: 3.10 Å
      • R-Value Free: 0.322 
      • R-Value Work: 0.285 
      • R-Value Observed: 0.288 
      • Space Group: P 21 21 21
      Unit Cell:
      Length ( Å )Angle ( ˚ )
      a = 41.726α = 90
      b = 56.332β = 90
      c = 115.152γ = 90
      Software Package:
      Software NamePurpose
      PHENIXrefinement
      PDB_EXTRACTdata extraction
      XDSdata reduction
      SCALAdata scaling
      PHASERphasing

      Structure Validation

      View Full Validation Report




      Entry History 

      Deposition Data

      Revision History  (Full details and data files)

      • Version 1.0: 2016-11-09
        Type: Initial release