5NO6

TEAD4-HOXB13 complex bound to DNA

• PDB DOI: https://doi.org/10.2210/pdb5NO6/pdb
• NAKB: 5NO6

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2017-04-11 Released: 2018-05-16 
• Deposition Author(s): Morgunova, E., Jolma, A., Yin, Y., Popov, A., Taipale, J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.88 Å
• R-Value Free: 0.317 
• R-Value Work: 0.240 
• R-Value Observed: 0.244 

Starting Model: experimental

Literature

TEAD4-HOXB13 complex bound to DNA

Morgunova, E., Jolma, A., Yin, Y., Popov, A., Taipale, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 54.11 kDa 
• Atom Count: 3,722 
• Modelled Residue Count: 339 
• Deposited Residue Count: 342 
• Unique protein chains: 2
• Unique nucleic acid chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Homeobox protein Hox-B13	A, D [auth B]	62	Homo sapiens	Mutation(s): 0  Gene Names: HOXB13
UniProt & NIH Common Fund Data Resources
Find proteins for Q92826 (Homo sapiens) Explore Q92826  Go to UniProtKB:  Q92826
PHAROS:  Q92826 GTEx:  ENSG00000159184

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional enhancer factor TEF-3	G [auth I], H [auth N]	73	Homo sapiens	Mutation(s): 0  Gene Names: TEAD4, RTEF1, TCF13L1, TEF3
UniProt & NIH Common Fund Data Resources
Find proteins for Q15561 (Homo sapiens) Explore Q15561  Go to UniProtKB:  Q15561
PHAROS:  Q15561 GTEx:  ENSG00000197905

Entity ID: 2
Molecule	Chains	Length	Organism	Image
DNA	B [auth C], E [auth D]	18	Homo sapiens

Entity ID: 3
Molecule	Chains	Length	Organism	Image
DNA	C [auth F], F [auth E]	18	Homo sapiens

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.88 Å
• R-Value Free: 0.317 
• R-Value Work: 0.240 
• R-Value Observed: 0.244 
• Space Group: I 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.659	α = 90
b = 56.674	β = 93.81
c = 144.993	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction
XDS	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-05-16 
Deposition Author(s): Morgunova, E., Jolma, A., Yin, Y., Popov, A., Taipale, J.

Revision History  

• Version 1.0: 2018-05-16
  Type: Initial release
  
• Version 1.1: 2024-01-17
  Changes: Data collection, Database references, Refinement description