8BRA

Polyester Hydrolase Leipzig 7 (PHL7) bound to terephthalic acid (TPA) and Mg2+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.161 
  • R-Value Work: 0.130 
  • R-Value Observed: 0.131 

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Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Structure and function of the metagenomic plastic-degrading polyester hydrolase PHL7 bound to its product.

Richter, P.K.Blazquez-Sanchez, P.Zhao, Z.Engelberger, F.Wiebeler, C.Kunze, G.Frank, R.Krinke, D.Frezzotti, E.Lihanova, Y.Falkenstein, P.Matysik, J.Zimmermann, W.Strater, N.Sonnendecker, C.

(2023) Nat Commun 14: 1905-1905

  • DOI: https://doi.org/10.1038/s41467-023-37415-x
  • Primary Citation of Related Structures:  
    8BRA, 8BRB

  • PubMed Abstract: 

    The recently discovered metagenomic-derived polyester hydrolase PHL7 is able to efficiently degrade amorphous polyethylene terephthalate (PET) in post-consumer plastic waste. We present the cocrystal structure of this hydrolase with its hydrolysis product terephthalic acid and elucidate the influence of 17 single mutations on the PET-hydrolytic activity and thermal stability of PHL7. The substrate-binding mode of terephthalic acid is similar to that of the thermophilic polyester hydrolase LCC and deviates from the mesophilic IsPETase. The subsite I modifications L93F and Q95Y, derived from LCC, increased the thermal stability, while exchange of H185S, derived from IsPETase, reduced the stability of PHL7. The subsite II residue H130 is suggested to represent an adaptation for high thermal stability, whereas L210 emerged as the main contributor to the observed high PET-hydrolytic activity. Variant L210T showed significantly higher activity, achieving a degradation rate of 20 µm h -1 with amorphous PET films.


  • Organizational Affiliation

    Institute of Bioanalytical Chemistry, Centre for Biotechnology and Biomedicine, Leipzig University, Leipzig, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Polyester Hydrolase Leipzig 7 (PHL-7), catalysis-deficient S131A mutant
A, B
267unidentifiedMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.161 
  • R-Value Work: 0.130 
  • R-Value Observed: 0.131 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52.352α = 90
b = 56.069β = 94.01
c = 100.442γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
CrysalisProdata collection
CrysalisProdata reduction
Aimlessdata scaling
Cootmodel building

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)Germany358304989

Revision History  (Full details and data files)

  • Version 1.0: 2023-04-19
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Author supporting evidence, Data collection