8B69

Heterotetramer of K-Ras4B(G12V) and Rgl2(RBD)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.07 Å
  • R-Value Free: 0.317 
  • R-Value Work: 0.237 
  • R-Value Observed: 0.240 

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Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Structural insights into the complex of oncogenic KRas4B G12V and Rgl2, a RalA/B activator.

Tariq, M.Ikeya, T.Togashi, N.Fairall, L.Kamei, S.Mayooramurugan, S.Abbott, L.R.Hasan, A.Bueno-Alejo, C.Sukegawa, S.Romartinez-Alonso, B.Muro Campillo, M.A.Hudson, A.J.Ito, Y.Schwabe, J.W.Dominguez, C.Tanaka, K.

(2024) Life Sci Alliance 7

  • DOI: https://doi.org/10.26508/lsa.202302080
  • Primary Citation of Related Structures:  
    8AU4, 8B69

  • PubMed Abstract: 

    About a quarter of total human cancers carry mutations in Ras isoforms. Accumulating evidence suggests that small GTPases, RalA, and RalB, and their activators, Ral guanine nucleotide exchange factors (RalGEFs), play an essential role in oncogenic Ras-induced signalling. We studied the interaction between human KRas4B and the Ras association (RA) domain of Rgl2 (Rgl2 RA ), one of the RA-containing RalGEFs. We show that the G12V oncogenic KRas4B mutation changes the interaction kinetics with Rgl2 RA The crystal structure of the KRas4B G12V : Rgl2 RA complex shows a 2:2 heterotetramer where the switch I and switch II regions of each KRas G12V interact with both Rgl2 RA molecules. This structural arrangement is highly similar to the HRas E31K :RALGDS RA crystal structure and is distinct from the well-characterised Ras:Raf complex. Interestingly, the G12V mutation was found at the dimer interface of KRas4B G12V with its partner. Our study reveals a potentially distinct mode of Ras:effector complex formation by RalGEFs and offers a possible mechanistic explanation for how the oncogenic KRas4B G12V hyperactivates the RalA/B pathway.


  • Organizational Affiliation

    https://ror.org/04h699437 Department of Molecular and Cell Biology, University of Leicester, Leicester, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ral guanine nucleotide dissociation stimulator-like 2
A, C
100Homo sapiensMutation(s): 0 
Gene Names: RGL2RAB2L
UniProt & NIH Common Fund Data Resources
Find proteins for O15211 (Homo sapiens)
Explore O15211 
Go to UniProtKB:  O15211
PHAROS:  O15211
GTEx:  ENSG00000237441 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO15211
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 2B of GTPase KRas
B, D
170Homo sapiensMutation(s): 1 
Gene Names: KRASKRAS2RASK2
EC: 3.6.5.2
UniProt & NIH Common Fund Data Resources
Find proteins for P01116 (Homo sapiens)
Explore P01116 
Go to UniProtKB:  P01116
PHAROS:  P01116
GTEx:  ENSG00000133703 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01116
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.07 Å
  • R-Value Free: 0.317 
  • R-Value Work: 0.237 
  • R-Value Observed: 0.240 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.843α = 90
b = 77.843β = 90
c = 163.728γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
REFMACrefinement
xia2data reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom204801/Z/16/Z
Other government--

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-23
    Type: Initial release
  • Version 1.1: 2023-10-25
    Changes: Database references