Further cytotoxic T cell escapes of SARS-CoV-2 JN.1 explain its dominant circulation in recent waves
Tian, J.M., Shang, B.L., Zhang, J.N., Guo, Y.Y., Hu, Y.C., Li, M.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
MHC class I antigen | 274 | Homo sapiens | Mutation(s): 0  Gene Names: HLA-A | ![]() | |
UniProt | |||||
Find proteins for A0A143Y4R2 (Homo sapiens) Explore A0A143Y4R2  Go to UniProtKB:  A0A143Y4R2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A143Y4R2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-2-microglobulin | 99 | Homo sapiens | Mutation(s): 0  Gene Names: B2M, CDABP0092, HDCMA22P | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61769 (Homo sapiens) Explore P61769  Go to UniProtKB:  P61769 | |||||
PHAROS:  P61769 GTEx:  ENSG00000166710  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61769 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Spike protein S2' | C [auth E] | 9 | Severe acute respiratory syndrome coronavirus 2 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P0DTC2 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC2  Go to UniProtKB:  P0DTC2 | |||||
Entity Groups   | |||||
UniProt Group | P0DTC2 | ||||
Sequence AnnotationsExpand | |||||
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Length ( Å ) | Angle ( ˚ ) |
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a = 163.036 | α = 90 |
b = 65.46 | β = 89.85 |
c = 49.924 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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National Natural Science Foundation of China (NSFC) | China | -- |