8XZ9 | pdb_00008xz9

BA.2.86 Spike in complex with bovine ACE2 (bound 2 ACE2)

• PDB DOI: https://doi.org/10.2210/pdb8XZ9/pdb
• EM Map EMD-38790: EMDB EMDataResource

• Classification: VIRAL PROTEIN
• Organism(s): Bos taurus, Severe acute respiratory syndrome coronavirus 2
• Expression System: Homo sapiens
• Mutation(s): Yes 


• Deposited: 2024-01-21 Released: 2024-11-13 
• Deposition Author(s): Yue, C., Liu, P.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.37 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

BA.2.86 Spike in complex with bovine ACE2

Yue, C., Liu, P.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 5-mer - A3B2 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 517.86 kDa 
• Atom Count: 35,083 
• Modeled Residue Count: 4,380 
• Deposited Residue Count: 4,552 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Processed angiotensin-converting enzyme 2	A, E	596	Bos taurus	Mutation(s): 0  Gene Names: ACE2 EC: 3.4.17 (UniProt), 3.4.17.23 (UniProt)
UniProt
Find proteins for Q58DD0 (Bos taurus) Explore Q58DD0  Go to UniProtKB:  Q58DD0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Spike glycoprotein	B, C, D	1,120	Severe acute respiratory syndrome coronavirus 2	Mutation(s): 25  Gene Names: S, 2
UniProt
Find proteins for P0DTC2 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC2  Go to UniProtKB:  P0DTC2
Glycosylation
Glycosylation Sites: 6		Go to GlyGen: P0DTC2-1

Oligosaccharides

Help

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	F, G [auth H], H [auth I], I [auth J], J [auth K], L [auth M], M [auth N], N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth G]	2		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G90333CG GlyCosmos:  G90333CG GlyGen:  G90333CG

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	K [auth L]	2		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.37 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-11-13 
Deposition Author(s): Yue, C., Liu, P.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-11-13
  Type: Initial release
  
• Version 1.1: 2024-11-20
  Changes: Data collection, Source and taxonomy
• Version 1.2: 2024-11-27
  Changes: Data collection