8XXE | pdb_00008xxe

TtCS-intermediate complex

PDB DOI: https://doi.org/10.2210/pdb8XXE/pdb

Classification: TRANSFERASE
Organism(s): Thermosulfidibacter takaii
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-01-18 Released: 2025-01-22
Deposition Author(s): Yang, L., Fang, Y.J.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.08 Å
R-Value Free:
0.217 (Depositor), 0.225 (DCC)
R-Value Work:
0.171 (Depositor), 0.181 (DCC)
R-Value Observed:
0.173 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

TtCS-intermediate complex

Yang, L., Fang, Y.J.

To be published.

Macromolecule Content

Total Structure Weight: 156.04 kDa
Atom Count: 11,484
Modeled Residue Count: 1,339
Deposited Residue Count: 1,347
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Citrate synthase	A, B, C	449	Thermosulfidibacter takaii	Mutation(s): 0 Gene Names: gltA, TST_0783 EC: 2.3.3.16
UniProt
Find proteins for A0A0S3QTD0 (Thermosulfidibacter takaii (strain DSM 17441 / JCM 13301 / NBRC 103674 / ABI70S6)) Explore A0A0S3QTD0 Go to UniProtKB: A0A0S3QTD0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0S3QTD0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
COA (Subject of Investigation/LOI) Query on COA Download:Ideal Coordinates CCD File SDF format, chain I [auth C] SDF format, chain G [auth B] SDF format, chain E [auth A] MOL2 format, chain I [auth C] MOL2 format, chain G [auth B] MOL2 format, chain E [auth A] mmCIF format, chain I [auth C] mmCIF format, chain G [auth B] mmCIF format, chain E [auth A]	E [auth A], G [auth B], I [auth C]	COENZYME A C₂₁ H₃₆ N₇ O₁₆ P₃ S RGJOEKWQDUBAIZ-IBOSZNHHSA-N		Interactions Focus chain E [auth A] Focus chain G [auth B] Focus chain I [auth C] Interactions & Density Focus chain E [auth A] Focus chain G [auth B] Focus chain I [auth C]
OAA (Subject of Investigation/LOI) Query on OAA Download:Ideal Coordinates CCD File SDF format, chain H [auth C] SDF format, chain F [auth B] SDF format, chain D [auth A] MOL2 format, chain H [auth C] MOL2 format, chain F [auth B] MOL2 format, chain D [auth A] mmCIF format, chain H [auth C] mmCIF format, chain F [auth B] mmCIF format, chain D [auth A]	D [auth A], F [auth B], H [auth C]	OXALOACETATE ION C₄ H₃ O₅ KHPXUQMNIQBQEV-UHFFFAOYSA-M		Interactions Focus chain D [auth A] Focus chain F [auth B] Focus chain H [auth C] Interactions & Density Focus chain D [auth A] Focus chain F [auth B] Focus chain H [auth C]
ACE (Subject of Investigation/LOI) Query on ACE Download:Ideal Coordinates CCD File SDF format, chain J [auth C] MOL2 format, chain J [auth C] mmCIF format, chain J [auth C]	J [auth C]	ACETYL GROUP C₂ H₄ O IKHGUXGNUITLKF-UHFFFAOYSA-N		Interactions Focus chain J [auth C] Interactions & Density Focus chain J [auth C]