8XT9 | pdb_00008xt9

structure of LGR4

PDB DOI: https://doi.org/10.2210/pdb8XT9/pdb
EM Map EMD-38641: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens, Camelus bactrianus
Expression System: Homo sapiens, Escherichia coli
Mutation(s): No
Membrane Protein: Yes PDBTM

Deposited: 2024-01-10 Released: 2025-01-15
Deposition Author(s): Wang, L., Geng, Y.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

structure of LGR4

Wang, L., Geng, Y.

To be published.

Macromolecule Content

Total Structure Weight: 116.57 kDa
Atom Count: 6,479
Modeled Residue Count: 842
Deposited Residue Count: 1,061
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Leucine-rich repeat-containing G-protein coupled receptor 4	A [auth C]	951	Homo sapiens	Mutation(s): 0 Gene Names: LGR4, GPR48 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BXB1 (Homo sapiens) Explore Q9BXB1 Go to UniProtKB: Q9BXB1
PHAROS: Q9BXB1 GTEx: ENSG00000205213
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9BXB1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
MB52	B [auth A]	110	Camelus bactrianus	Mutation(s): 0
UniProt
Find proteins for A0A0F6YEF6 (Camelus dromedarius) Explore A0A0F6YEF6 Go to UniProtKB: A0A0F6YEF6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0F6YEF6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487:

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-01-15

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2025-01-15
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.