8W6K | pdb_00008w6k

in situ room temperature Laue crystallography

• PDB DOI: https://doi.org/10.2210/pdb8W6K/pdb

• Classification: LYASE
• Organism(s): Asplenium bulbiferum subsp. bulbiferum
• Mutation(s): No 


• Deposited: 2023-08-29 Released: 2024-01-17 
• Deposition Author(s): Wang, Z.J., Wang, S.S., Pan, Q.Y., Yu, L., Su, Z.H., Yang, T.Y., Wang, Y.Z., Zhang, W.Z., Hao, Q., Gao, X.Y.
• Funding Organization(s): National Basic Research Program of China (973 Program)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.298 (Depositor), 0.298 (DCC) 
• R-Value Work: 
  0.209 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.219 (Depositor) 

Starting Model: experimental

Literature

BL03HB: a Laue microdiffraction beamline for both protein crystallography and materials science at SSRF

Wang, Z.J., Wang, S.S., Su, Z.H., Yu, L., Wang, Y.Z., Sun, B., Wen, W., Gao, X.Y.

(2024) Nucl Sci Tech 35: 119

• DOI: https://doi.org/10.1007/s41365-024-01475-5

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 14.33 kDa 
• Atom Count: 1,018 
• Modeled Residue Count: 129 
• Deposited Residue Count: 129 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lysozyme C	A	129	Asplenium bulbiferum subsp. bulbiferum	Mutation(s): 0  EC: 3.2.1.17
UniProt
Find proteins for P00698 (Gallus gallus) Explore P00698  Go to UniProtKB:  P00698

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.298 (Depositor), 0.298 (DCC) 
• R-Value Work:  0.209 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.219 (Depositor) 

Diffraction Data: https://doi.org/10.18430/M38W6K

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.56	α = 90
b = 78.56	β = 90
c = 37.5	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
LaueView	data reduction
pointless	data scaling
PHASES	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2024-01-17 
Deposition Author(s): Wang, Z.J., Wang, S.S., Pan, Q.Y., Yu, L., Su, Z.H., Yang, T.Y., Wang, Y.Z., Zhang, W.Z., Hao, Q., Gao, X.Y.

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Funding Organization	Location	Grant Number
National Basic Research Program of China (973 Program)	China	--

Revision History  

• Version 1.0: 2024-01-17
  Type: Initial release
  
• Version 1.1: 2024-10-02
  Changes: Database references
• Version 1.2: 2024-10-23
  Changes: Structure summary