8VOR | pdb_00008vor

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Molodtsov, V., Wang, C., Ebright, R.H.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L21A [auth 0]103Escherichia coliMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L22B [auth 1]110Escherichia coliMutation(s): 0 
Gene Names: rplV, eryB, b3315, JW3277
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L23C [auth 2]100Escherichia coliMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L24D [auth 3]104Escherichia coliMutation(s): 0 
Gene Names: rplX, EAVG_03047
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L25E [auth 4]94Escherichia coliMutation(s): 0 
Gene Names: rplY
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L10I [auth 9]165Escherichia coliMutation(s): 0 
Gene Names: rplJ, b3985, JW3948
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit betaK [auth AA]1,342Escherichia coliMutation(s): 0 
Gene Names: rpoB, groN, nitB, rif, ron, stl, stv, tabD, b3987, JW3950
EC: 2.7.7.6
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription termination/antitermination protein NusGL [auth AB]181Escherichia coliMutation(s): 0 
Gene Names: nusG
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit alphaM [auth AC],
N [auth AD]		329Escherichia coliMutation(s): 0 
Gene Names: rpoA, pez, phs, sez, b3295, JW3257
EC: 2.7.7.6
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit beta'O [auth AE]1,407Escherichia coliMutation(s): 0 
Gene Names: rpoC, tabB, b3988, JW3951
EC: 2.7.7.6
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit omegaP [auth AF]91Escherichia coliMutation(s): 0 
Gene Names: rpoZ, b3649, JW3624
EC: 2.7.7.6
UniProt
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription termination/antitermination protein NusAQ [auth AG]495Escherichia coliMutation(s): 0 
Gene Names: nusA
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S18S [auth C]75Escherichia coliMutation(s): 0 
Gene Names: rpsR
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S20U [auth E]87Escherichia coliMutation(s): 0 
Gene Names: rpsT
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S21V [auth F]71Escherichia coliMutation(s): 0 
Gene Names: rpsU
UniProt
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S2W [auth G]241Escherichia coliMutation(s): 0 
Gene Names: rpsB
UniProt
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S1X [auth H]557Escherichia coliMutation(s): 0 
Gene Names: EAXG_00304
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S3Y [auth I]233Escherichia coliMutation(s): 0 
Gene Names: rpsC
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S4Z [auth J]206Escherichia coliMutation(s): 0 
Gene Names: rpsD, ramA, b3296, JW3258
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S5AA [auth K]167Escherichia coliMutation(s): 0 
Gene Names: rpsE, spc, b3303, JW3265
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S6BA [auth L]135Escherichia coliMutation(s): 0 
Gene Names: rpsF, b4200, JW4158
UniProt
Find proteins for P02358 (Escherichia coli (strain K12))
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S7CA [auth M]179Escherichia coliMutation(s): 0 
Gene Names: rpsG, b3341, JW3303
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S8DA [auth N]130Escherichia coliMutation(s): 0 
Gene Names: rpsH, HMPREF9536_01683
UniProt
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S9EA [auth O]130Escherichia coliMutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S10FA [auth P]103Escherichia coliMutation(s): 0 
Gene Names: rpsJ, HMPREF1620_00582
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S11GA [auth Q]129Escherichia coliMutation(s): 0 
Gene Names: rpsK
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S12HA [auth R]124Escherichia coliMutation(s): 0 
Gene Names: rpsL, strA, b3342, JW3304
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S14IA [auth S]101Escherichia coliMutation(s): 0 
Gene Names: rpsN, HMPREF1591_00914
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS15JA [auth T]89Escherichia coliMutation(s): 0 
Gene Names: rpsO
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S16KA [auth U]82Escherichia coliMutation(s): 0 
Gene Names: rpsP
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S17LA [auth V]84Escherichia coliMutation(s): 0 
Gene Names: rpsQ
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S19MA [auth W]92Escherichia coliMutation(s): 0 
Gene Names: rpsS, A1UI_03589
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S13NA [auth X]118Escherichia coliMutation(s): 0 
Gene Names: rpsM, G711_03878
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L11OA [auth Y]142Escherichia coliMutation(s): 0 
Gene Names: rplK, relC, b3983, JW3946
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L7/L12PA [auth Z]121Escherichia coliMutation(s): 0 
Gene Names: rplL
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L27RA [auth b]85Escherichia coliMutation(s): 0 
Gene Names: rpmA, b3185, JW3152
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L28SA [auth c]78Escherichia coliMutation(s): 0 
Gene Names: rpmB, ECVG_03476
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L29UA [auth e]63Escherichia coliMutation(s): 0 
Gene Names: rpmC, ECDG_03892
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L30VA [auth f]59Escherichia coliMutation(s): 0 
Gene Names: rpmD, HMPREF1611_03432
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L31WA [auth g]70Escherichia coliMutation(s): 0 
Gene Names: rpmE, b3936, JW3907
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L2XA [auth h]273Escherichia coliMutation(s): 0 
Gene Names: rplB, b3317, JW3279
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L32YA [auth i]57Escherichia coliMutation(s): 0 
Gene Names: rpmF, HMPREF9536_00655
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L3ZA [auth j]209Escherichia coliMutation(s): 0 
Gene Names: rplC, b3320, JW3282
UniProt
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L33AB [auth k]55Escherichia coliMutation(s): 0 
Gene Names: rpmG, SSJG_04343
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L4BB [auth l]201Escherichia coliMutation(s): 0 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L34CB [auth m]46Escherichia coliMutation(s): 0 
Gene Names: rpmH
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L5DB [auth n]179Escherichia coliMutation(s): 0 
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L35EB [auth o]65Escherichia coliMutation(s): 0 
Gene Names: rpmI, b1717, JW1707
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L6FB [auth p]177Escherichia coliMutation(s): 0 
Gene Names: 
rplF, A5U30_004539, A8499_003319, A8502_004036, A9X72_02250, AAG43_004459, AAS29_002175, ACN68_01830, ACN81_25455, ACU57_21025, AM464_09155, APX88_16140, AT845_004391, AW118_24835, AW119_26645, AWP47_12710, B6R12_002820, B6R15_004082, B6R31_004981, B6R48_005048, B6R87_004958, BANRA_04315, BANRA_04463, BEA19_23360, BER14_25125, BF481_004943, BG944_001120, BGM66_003606, BHS81_19770, BJI68_08740, BJJ90_02190, BK292_20440, BK383_24710, BKL28_004556, BLM69_000027, BMC79_004432, BMT50_12280, BON92_01205, BR158_003777, BRV02_004610, BRV34_003983, BRV41_004371, BSR05_22725, BTB68_004369, BTQ06_10625, BUO55_004710, BvCmsKKP061_03017, BXT93_05540, BZL69_25965, C0P57_002655, C1Q91_004917, C2121_004175, C2M16_25470, C2R31_004620, C3F40_19785, C5N07_23555, C9114_23825, C9E67_02790, C9Z68_22570, CA593_09715, CCS08_00150, CDL36_25575, CDL37_18610, CF22_004862, CG831_003636, CIG67_10740, CO706_15220, CQ986_004894, CR538_02485, CR539_21835, CR628_001353, CTR35_003617, CWS33_24875, CX938_003818, CY655_21255, D0X26_24515, D3G36_23115, D4M65_20590, D4N09_20190, D4U49_16165, D9D43_22615, D9E34_23590, D9E49_05175, D9H94_20815, D9J03_20070, D9J61_16670, DD762_23565, DIV22_15240, DN627_24350, DNQ45_03775, DNX30_25460, DRW19_25065, DS732_24280, DTL43_20980, DTL90_24710, DTM45_24535, DU321_12020, E0I42_22210, E3N34_07180, E4K51_21510, E5H86_24505, E6D34_21740, EA239_22810, EA435_23050, EAI46_07495, EAN77_23505, EAX79_10730, EBP16_21855, EC95NR1_02696, ECs4170, EHD79_24220, EIZ93_12450, EKI52_17645, EL79_0411, ELT17_22420, ELT48_22940, ELX68_21470, ELX76_22960, ELX79_22070, ELX96_16825, ELY41_18740, ELY48_23180, EN85_004362, EPS76_07195, ERS085406_04403, ERS139208_04351, EWK56_25015, ExPECSC038_03653, F3N40_22345, F7F11_22705, F7N46_23990, F9413_21215, F9461_25635, F9B07_24665, F9S83_19010, FA868_22765, FDM60_20820, FEJ01_22495, FFF58_25435, FGG80_25115, FHD44_21285, FIJ20_21175, FJQ40_18325, FJQ53_22895, FKO60_25655, FOI11_019240, FOI11_03940, FPI65_20325, FPS11_25410, FTV90_00770, FTV93_20880, FV293_22445, FVB16_04890, FWK02_06290, FZN31_02615, FZU14_21840, G3565_26335, G3V95_19865, G3W53_20975, G4A38_21530, G4A47_20800, G9448_17055, GAI89_24810, GAJ12_24700, GAJ26_22030, GF699_19755, GFY34_22880, GIB53_19380, GJ11_21405, GJO56_22755, GKF66_21565, GKF89_18490, GNW61_16650, GNZ05_25965, GOP25_22725, GP711_23325, GP944_18810, GP954_00925, GP965_04315, GP975_01205, GP979_01985, GQA06_03930, GQM04_10585, GQM13_25220, GQM21_11250, GQN34_23285, GQW07_21530, GRC73_21730, GRO95_20795, GRW05_09080, GRW24_04735, GRW56_00315, GRW57_03520, GSM54_23310, GSY44_20020, GUC01_21200, GUI33_20065, H0O51_24755, H0O53_20810, H0O72_19435, H6Y26_003167, HCQ42_003945, HEP30_018655, HEP34_004767, HHH44_004532, HI055_004143, HIE29_005190, HJ942_004435, HJQ60_005008, HKA49_005032, HL563_21530, HLV18_23320, HLX92_10055, HLZ50_22160, HMV95_19625, HV109_02170, HV209_14695, HVV39_09285, HVW43_18650, HVX31_01950, HVY77_02155, HVZ30_02035, HVZ71_02340, HX136_02175, I6H00_20905, I6H02_12010, IA00_004091, IFB95_004809, IH772_23995, IT029_004950, J0541_004400, J4S20_004799, J5U05_004084, JE86ST02C_37730, JE86ST05C_37760, JFD_03716, JNP96_25325, NCTC10082_02836, NCTC10089_00499, NCTC10090_03524, NCTC10418_00687, NCTC10764_03860, NCTC10767_01513, NCTC11112_01039, NCTC11126_02768, NCTC11181_02735, NCTC11341_01892, NCTC12950_00476, NCTC13127_00783, NCTC13148_03444, NCTC13216_01355, NCTC4450_02472, NCTC7927_00548, NCTC7928_02519, NCTC8009_01508, NCTC8333_00486, NCTC8450_04934, NCTC8621_00505, NCTC8959_03264, NCTC8960_03067, NCTC8985_04979, NCTC9001_04251, NCTC9044_01360, NCTC9077_00601, NCTC9081_00914, NCTC9111_00864, NCTC9117_00753, NCTC9702_00534, NCTC9706_02734, NCTC9775_04000, NCTC9777_01888, ND22_005153, RG28_21630, SAMEA3472044_01159, SAMEA3472056_05414, SAMEA3472147_04289, SAMEA3751407_00027, SAMEA3752557_01955, SAMEA3753106_04631, TUM18780_04330, WR15_19625

UniProt
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L36GB [auth q]38Escherichia coliMutation(s): 0 
Gene Names: rpmJ
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L9HB [auth r]149Escherichia coliMutation(s): 0 
Gene Names: rplI, HMPREF1611_02665
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L13IB [auth s]142Escherichia coliMutation(s): 0 
Gene Names: rplM, A1UI_03510
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L14JB [auth t]123Escherichia coliMutation(s): 0 
Gene Names: rplN, A13A_03633
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L15KB [auth u]144Escherichia coliMutation(s): 0 
Gene Names: rplO
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L16LB [auth v]136Escherichia coliMutation(s): 0 
Gene Names: rplP, b3313, JW3275
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L17MB [auth w]127Escherichia coliMutation(s): 0 
Gene Names: rplQ, EAXG_02993
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L18NB [auth x]117Escherichia coliMutation(s): 0 
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L19OB [auth y]115Escherichia coliMutation(s): 0 
Gene Names: rplS, HMPREF1620_00384
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L20PB [auth z]118Escherichia coliMutation(s): 0 
Gene Names: rplT
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Entity ID: 6
MoleculeChains LengthOrganismImage
NT DNAF [auth 5]36synthetic construct
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Entity ID: 7
MoleculeChains LengthOrganismImage
T DNAG [auth 6]36synthetic construct
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Entity ID: 8
MoleculeChains LengthOrganismImage
mRNA with 51 nt long spacerH [auth 7]68synthetic construct
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Entity ID: 10
MoleculeChains LengthOrganismImage
E-site and P-site tRNA (fMet)J [auth A],
R [auth B]		76Escherichia coli
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Entity ID: 18
MoleculeChains LengthOrganismImage
16S rRNAT [auth D]1,542Escherichia coli
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Entity ID: 41
MoleculeChains LengthOrganismImage
23S rRNAQA [auth a]2,904Escherichia coli
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Entity ID: 44
MoleculeChains LengthOrganismImage
5S rRNATA [auth d]120Escherichia coli
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-23
    Type: Initial release