8THK

Cryo-EM structure of A61603-bound alpha-1A-adrenergic receptor in complex with heterotrimeric Gq-protein


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural basis of agonist specificity of alpha 1A -adrenergic receptor.

Su, M.Wang, J.Xiang, G.Do, H.N.Levitz, J.Miao, Y.Huang, X.Y.

(2023) Nat Commun 14: 4819-4819

  • DOI: https://doi.org/10.1038/s41467-023-40524-2
  • Primary Citation of Related Structures:  
    8THK, 8THL

  • PubMed Abstract: 

    α 1 -adrenergic receptors (α 1 -ARs) play critical roles in the cardiovascular and nervous systems where they regulate blood pressure, cognition, and metabolism. However, the lack of specific agonists for all α 1 subtypes has limited our understanding of the physiological roles of different α 1 -AR subtypes, and led to the stagnancy in agonist-based drug development for these receptors. Here we report cryo-EM structures of α 1A -AR in complex with heterotrimeric G-proteins and either the endogenous common agonist epinephrine or the α 1A -AR-specific synthetic agonist A61603. These structures provide molecular insights into the mechanisms underlying the discrimination between α 1A -AR and α 1B -AR by A61603. Guided by the structures and corresponding molecular dynamics simulations, we engineer α 1A -AR mutants that are not responsive to A61603, and α 1B -AR mutants that can be potently activated by A61603. Together, these findings advance our understanding of the agonist specificity for α 1 -ARs at the molecular level, opening the possibility of rational design of subtype-specific agonists.


  • Organizational Affiliation

    Department of Physiology and Biophysics, Weill Cornell Medical College of Cornell University, New York, NY, 10065, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(i) subunit alpha-2,Guanine nucleotide-binding protein G(s) subunit alpha isoforms short,Guanine nucleotide-binding protein G(q) subunit alpha246Homo sapiensMutation(s): 0 
Gene Names: GNAI2GNAI2BGNASGNAS1GSPGNAQGAQ
EC: 3.6.5
Membrane Entity: Yes 
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PHAROS:  P04899
GTEx:  ENSG00000114353 
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GTEx:  ENSG00000087460 
Find proteins for P50148 (Homo sapiens)
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PHAROS:  P50148
GTEx:  ENSG00000156052 
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UniProt GroupsP63092P04899P50148
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1358Homo sapiensMutation(s): 0 
Gene Names: GNB1
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PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2C [auth G]71Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Single fab chain (scFv16)D [auth F]267Homo sapiensMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Endolysin,Alpha-1A adrenergic receptorE [auth R]503Tequatrovirus T4Homo sapiens
This entity is chimeric
Mutation(s): 0 
Gene Names: EADRA1AADRA1C
EC: 3.2.1.17
Membrane Entity: Yes 
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GTEx:  ENSG00000120907 
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UniProt GroupsP00720P35348
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Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CGZ (Subject of Investigation/LOI)
Query on CGZ

Download Ideal Coordinates CCD File 
F [auth R]N-[(5S)-5-(4,5-dihydro-1H-imidazol-2-yl)-2-hydroxy-5,6,7,8-tetrahydronaphthalen-1-yl]methanesulfonamide
C14 H19 N3 O3 S
OQFCXJDXHCDLHX-NSHDSACASA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM138676
American Heart AssociationUnited States23CDA1049353

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-16
    Type: Initial release
  • Version 1.1: 2024-05-01
    Changes: Database references
  • Version 1.2: 2024-11-06
    Changes: Data collection, Structure summary