8SP6

Deposited: 2023-05-02 Released: 2024-03-13
Deposition Author(s): Song, X., Beldar, S., Dong, A., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)
Funding Organization(s): Other private

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Chromodomain Y-like protein 2	A, B, C, D, E A, B, C, D, E, F	62	Homo sapiens	Mutation(s): 0 Gene Names: CDYL2
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N8U2 (Homo sapiens) Explore Q8N8U2 Go to UniProtKB: Q8N8U2
PHAROS: Q8N8U2 GTEx: ENSG00000166446
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8N8U2
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
(5R0)FAL(MLZ)(5R5)	G, H, I, J, K G, H, I, J, K, L	6	synthetic construct	Mutation(s): 0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
I9A (Subject of Investigation/LOI) Query on I9A Download Ideal Coordinates CCD File SDF format, chain N [auth G] SDF format, chain O [auth H] SDF format, chain P [auth I] SDF format, chain Q [auth J] SDF format, chain R [auth K] SDF format, chain S [auth L] MOL2 format, chain N [auth G] MOL2 format, chain O [auth H] MOL2 format, chain P [auth I] MOL2 format, chain Q [auth J] MOL2 format, chain R [auth K] MOL2 format, chain S [auth L]	N [auth G] O [auth H] P [auth I] Q [auth J] R [auth K] N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L]	(1s,4s)-bicyclo[2.2.1]heptane C₇ H₁₂ UMRZSTCPUPJPOJ-KNVOCYPGSA-N		Interactions Focus chain N [auth G] Focus chain O [auth H] Focus chain P [auth I] Focus chain Q [auth J] Focus chain R [auth K] Focus chain S [auth L] Interactions & Density Focus chain N [auth G] Focus chain O [auth H] Focus chain P [auth I] Focus chain Q [auth J] Focus chain R [auth K] Focus chain S [auth L]
UNX Query on UNX Download Ideal Coordinates CCD File SDF format, chain M [auth D] MOL2 format, chain M [auth D]	M [auth D]	UNKNOWN ATOM OR ION X		Interactions Focus chain M [auth D] Interactions & Density Focus chain M [auth D]