8SP6 | pdb_00008sp6

COMPLEX STRUCTURE OF CDYL2 WITH AN ANTAGONIST

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Chromo domain-like	8062263	3000161	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Chromo domain-like	8062263	3000161	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Chromo domain-like	8062263	3000161	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Chromo domain-like	8062263	3000161	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Chromo domain-like	8062263	3000161	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Chromo domain-like	8062263	3000161	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00385	Chromo (CHRromatin Organisation MOdifier) domain (Chromo)	Chromo (CHRromatin Organisation MOdifier) domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G, H, I, J, K G, H, I, J, K, L	(5R0)FAL(MLZ)(5R5)	-	-	-
A, B, C, D, E A, B, C, D, E, F	Chromodomain Y-like protein 2	transcription corepressor activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity histone H3K9me2/3 reader activity histone reader activity histone H3 reader activity chromatin-protein adaptor activity histone H3K27me3 reader activity	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR051053	Enoyl-CoA hydratase/isomerase and chromodomain-containing protein	Family
A, B, C, D, E A, B, C, D, E, F	IPR001753	Enoyl-CoA hydratase/isomerase	Family
A, B, C, D, E A, B, C, D, E, F	IPR000953	Chromo/chromo shadow domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR023780	Chromo domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR016197	Chromo-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR014748	Enoyl-CoA hydratase, C-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR023779	Chromo domain, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	Pharos: Q8N8U2	subependymal giant cell astrocytoma astrocytic tumor cancer glioblastoma large cell medulloblastoma medulloblastoma osteosarcoma pituitary cancer ulcerative colitis atypical teratoid rhabdoid tumor cystic fibrosis inflammatory bowel disease malignant ependymoma nodular sclerosis classical Hodgkin lymphoma ovarian cancer subependymal giant cell astrocytoma astrocytic tumor cancer glioblastoma large cell medulloblastoma medulloblastoma osteosarcoma pituitary cancer ulcerative colitis atypical teratoid rhabdoid tumor cystic fibrosis inflammatory bowel disease malignant ependymoma nodular sclerosis classical Hodgkin lymphoma ovarian cancer primitive neuroectodermal tumor breast carcinoma ductal breast carcinoma in situ invasive ductal breast carcinoma malignant glioma oligodendroglioma pilocytic astrocytoma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
G, H, I, J, K G, H, I, J, K, L	5R0
G, H, I, J, K G, H, I, J, K, L	5R5	Parent Component: SER
G, H, I, J, K G, H, I, J, K, L	MLZ	Parent Component: LYS RESID: AA0076 PSI-MOD : N6-methyl-L-lysine MOD:00085

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.