8S32 | pdb_00008s32

GroEL with bound GroTAC peptide

PDB DOI: https://doi.org/10.2210/pdb8S32/pdb
EM Map EMD-19687: EMDB EMDataResource

Classification: CHAPERONE
Organism(s): Escherichia coli, synthetic construct
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-02-19 Released: 2024-02-28
Deposition Author(s): Wroblewski, K., Izert-Nowakowska, M.A., Goral, T.K., Klimecka, M.M., Kmiecik, S., Gorna, M.W.
Funding Organization(s): Foundation for Polish Science, Polish National Science Centre

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: in silico
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Depletion of essential GroEL protein in Escherichia coli using Clp-Interacting Peptidic Protein Erasers (CLIPPERs)

Izert-Nowakowska, M.A., Klimecka, M.M., Antosiewicz, A., Wroblewski, K., Bandyra, K.J., Goral, T.K., Kmiecik, S., Serwa, R.A., Gorna, M.W.

To be published.

Macromolecule Content

Total Structure Weight: 847.96 kDa
Atom Count: 55,552
Modeled Residue Count: 7,518
Deposited Residue Count: 8,064
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Chaperonin GroEL	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	548	Escherichia coli	Mutation(s): 0 Gene Names: groEL, groL, mopA, b4143, JW4103 EC: 5.6.1.7
UniProt
Find proteins for P0A6F5 (Escherichia coli (strain K12)) Explore P0A6F5 Go to UniProtKB: P0A6F5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A6F5
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
GroTAC	AA [auth 1] BA [auth 2] O P Q AA [auth 1], BA [auth 2], O, P, Q, R, S, T, U, V, W, X, Y, Z	28	synthetic construct	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	4.4
MODEL REFINEMENT	Coot	0.9.8.5
MODEL REFINEMENT	PHENIX	1.21.5207

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-02-28

Deposition Author(s):

Izert-Nowakowska, M.A.

Funding Organization	Location	Grant Number
Foundation for Polish Science	Poland	POIR.04.04.00-00-5EC1
Polish National Science Centre	Poland	2020/39/B/NZ2/01301

Revision History (Full details and data files)

Version 1.0: 2024-02-28
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.