8RQY

MakC and MakD are two proteins associated with a tripartite toxin of Vibrio cholerae

PDB DOI: https://doi.org/10.2210/pdb8RQY/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Vibrio cholerae O1 biovar El Tor str. N16961
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-01-21 Released: 2024-09-25
Deposition Author(s): Bodra, N., Persson, K., Nadeem, A., Wai, S.N., Toh, E.
Funding Organization(s): Kempe Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.04 Å
R-Value Free: 0.200
R-Value Work: 0.183

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

MakC and MakD are two proteins associated with a tripartite toxin of Vibrio cholerae

Bodra, N., Toh, E., Nadeem, A., Wai, S.N., Persson, K.

(2024) Front Microbiol 15

DOI: https://doi.org/10.3389/fmicb.2024.1457850

Macromolecule Content

Total Structure Weight: 14.53 kDa
Atom Count: 1,051
Modelled Residue Count: 131
Deposited Residue Count: 133
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Inclusion body protein	A	133	Vibrio cholerae O1 biovar El Tor str. N16961	Mutation(s): 0 Gene Names: VC_A0881
UniProt
Find proteins for Q9KL66 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KL66 Go to UniProtKB: Q9KL66
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9KL66
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.04 Å
R-Value Free: 0.200
R-Value Work: 0.183
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.998	α = 90
b = 98.008	β = 90
c = 54.528	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
autoPROC	data scaling
CRANK2	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-09-25

Deposition Author(s):

Funding Organization	Location	Grant Number
Kempe Foundation	Sweden	1969.3 U25
Kempe Foundation	Sweden	22-0138

Revision History (Full details and data files)

Version 1.0: 2024-09-25
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.