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MakC and MakD are two proteins associated with a tripartite toxin of Vibrio cholerae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 293 0.2 M potassium sodium tartarate, 0.1 M sodium citrate, pH 5.6 and 2M Ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.13 42.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.998 α = 90 b = 98.008 β = 90 c = 54.528 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2022-09-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.97934 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.04 36.4 97.1 0.177 0.192 0.073 0.994 8.5 6.8 8027
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.045 2.08 100 1.134 0.451 0.76 2 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.045 36.4 8024 419 97.049 0.184 0.1826 0.1942 0.1997 0.1951 30.403
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.856 3.083 -2.226
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.293 r_dihedral_angle_3_deg 15.288 r_lrange_other 9.577 r_lrange_it 9.568 r_dihedral_angle_1_deg 8.433 r_scangle_it 7.87 r_scangle_other 7.865 r_scbond_it 5.413 r_scbond_other 5.408 r_mcangle_it 4.534
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.293 r_dihedral_angle_3_deg 15.288 r_lrange_other 9.577 r_lrange_it 9.568 r_dihedral_angle_1_deg 8.433 r_scangle_it 7.87 r_scangle_other 7.865 r_scbond_it 5.413 r_scbond_other 5.408 r_mcangle_it 4.534 r_mcangle_other 4.533 r_dihedral_angle_2_deg 4.417 r_mcbond_it 3.341 r_mcbond_other 3.339 r_angle_refined_deg 1.989 r_angle_other_deg 0.678 r_nbd_other 0.276 r_xyhbond_nbd_refined 0.229 r_symmetry_nbd_refined 0.224 r_symmetry_nbd_other 0.216 r_nbd_refined 0.21 r_nbtor_refined 0.178 r_symmetry_xyhbond_nbd_refined 0.167 r_chiral_restr 0.093 r_symmetry_nbtor_other 0.091 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1006 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling CRANK2 phasing