8RON

Crystal structure of human FAD synthase, isoform 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.215 
  • R-Value Observed: 0.218 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural insights into the bifunctional enzyme human FAD synthase.

Leo, G.Leone, P.Ataie Kachoie, E.Tolomeo, M.Galluccio, M.Indiveri, C.Barile, M.Capaldi, S.

(2024) Structure 

  • DOI: https://doi.org/10.1016/j.str.2024.04.006
  • Primary Citation of Related Structures:  
    8ROM, 8RON

  • PubMed Abstract: 

    Human flavin adenine dinucleotide synthase (hFADS) is a bifunctional, multi-domain enzyme that exhibits both flavin mononucleotide adenylyltransferase and pyrophosphatase activities. Here we report the crystal structure of full-length hFADS2 and its C-terminal PAPS domain in complex with flavin adenine dinucleotide (FAD), and dissect the structural determinants underlying the contribution of each individual domain, within isoforms 1 and 2, to each of the two enzymatic activities. Structural and functional characterization performed on complete or truncated constructs confirmed that the C-terminal domain tightly binds FAD and catalyzes its synthesis, while the combination of the N-terminal molybdopterin-binding and KH domains is the minimal essential substructure required for the hydrolysis of FAD and other ADP-containing dinucleotides. hFADS2 associates in a stable C2-symmetric dimer, in which the packing of the KH domain of one protomer against the N-terminal domain of the other creates the adenosine-specific active site responsible for the hydrolytic activity.


  • Organizational Affiliation

    Department of Biotechnology, University of Verona, Strada Le Grazie 15, 37134 Verona, Italy.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 2 of FAD synthase
A, B, C, D
482Homo sapiensMutation(s): 0 
Gene Names: FLAD1PP591
EC: 2.7.7.2
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NFF5 (Homo sapiens)
Explore Q8NFF5 
Go to UniProtKB:  Q8NFF5
PHAROS:  Q8NFF5
GTEx:  ENSG00000160688 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8NFF5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.215 
  • R-Value Observed: 0.218 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 75.754α = 90
b = 187.74β = 96.453
c = 79.383γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
autoPROCdata reduction
autoPROCdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministero dell Universita e della RicercaItalyPE_00000019 "HEAL ITALIA"

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-10
    Type: Initial release
  • Version 1.1: 2024-05-15
    Changes: Database references