8QJD

T6SS-linked Rhs repeat protein - Salmonella bongori Rhs-core domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.184 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

T6SS-associated Rhs proteins form toxin containers: Structural and functional insights into bacterial weaponry and self-protection

Kielkopf, C.S.Leiman, P.G.Taylor, N.M.I.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Salmonella bongori Rhs core domain (residues 360-1420)
A, B
1,065Salmonella bongori N268-08Mutation(s): 0 
Gene Names: A464_2174
UniProt
Find proteins for S5MXP0 (Salmonella bongori N268-08)
Explore S5MXP0 
Go to UniProtKB:  S5MXP0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS5MXP0
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
C [auth A],
D [auth B]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.184 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 99.071α = 90
b = 118.26β = 105.52
c = 131.757γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXrefinement
Cootmodel building
ARP/wARPmodel building
BUCCANEERphasing
SHARPphasing
XDSdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland310030_144243

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-25
    Type: Initial release