8QFL

Ergothioneine dioxygenase from Thermocatellispora tengchongensis in complex with iron


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.173 
  • R-Value Observed: 0.175 

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This is version 1.1 of the entry. See complete history


Literature

Enzyme-Catalyzed Oxidative Degradation of Ergothioneine.

Nalivaiko, E.Y.Vasseur, C.M.Seebeck, F.P.

(2024) Angew Chem Int Ed Engl 63: e202318445-e202318445

  • DOI: https://doi.org/10.1002/anie.202318445
  • Primary Citation of Related Structures:  
    8QFL, 8QFM, 8QFN, 8QFO, 8QFP, 8QFQ

  • PubMed Abstract: 

    Ergothioneine is a sulfur-containing metabolite that is produced by bacteria and fungi, and is absorbed by plants and animals as a micronutrient. Ergothioneine reacts with harmful oxidants, including singlet oxygen and hydrogen peroxide, and may therefore protect cells against oxidative stress. Herein we describe two enzymes from actinobacteria that cooperate in the specific oxidative degradation of ergothioneine. The first enzyme is an iron-dependent thiol dioxygenase that produces ergothioneine sulfinic acid. A crystal structure of ergothioneine dioxygenase from Thermocatellispora tengchongensis reveals many similarities with cysteine dioxygenases, suggesting that the two enzymes share a common mechanism. The second enzyme is a metal-dependent ergothioneine sulfinic acid desulfinase that produces Nα-trimethylhistidine and SO 2 . The discovery that certain actinobacteria contain the enzymatic machinery for O 2 -dependent biosynthesis and O 2 -dependent degradation of ergothioneine indicates that these organisms may actively manage their ergothioneine content.


  • Organizational Affiliation

    Department of Chemistry, University of Basel, Mattenstrasse 22, 4002, Basel, Switzerland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cysteine dioxygenase
A, B
184Thermocatellispora tengchongensisMutation(s): 0 
Gene Names: HNP84_002159
UniProt
Find proteins for A0A840P3H4 (Thermocatellispora tengchongensis)
Explore A0A840P3H4 
Go to UniProtKB:  A0A840P3H4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A840P3H4
Sequence Annotations
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.173 
  • R-Value Observed: 0.175 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.611α = 90
b = 58.946β = 90
c = 134.776γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland182023

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-27
    Type: Initial release
  • Version 1.1: 2024-02-21
    Changes: Database references