8Q0S

X-ray structure of the single chain monellin derivative MNEI


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.19 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.216 

wwPDB Validation   3D Report Full Report


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Literature

Structural insights and aggregation propensity of a super-stable monellin mutant: A new potential building block for protein-based nanostructured materials.

Lucignano, R.Spadaccini, R.Merlino, A.Ami, D.Natalello, A.Ferraro, G.Picone, D.

(2024) Int J Biol Macromol 254: 127775-127775

  • DOI: https://doi.org/10.1016/j.ijbiomac.2023.127775
  • Primary Citation of Related Structures:  
    8Q0R, 8Q0S

  • PubMed Abstract: 

    Protein fibrillation is commonly associated with pathologic amyloidosis. However, under appropriate conditions several proteins form fibrillar structures in vitro that can be used for biotechnological applications. MNEI and its variants, firstly designed as single chain derivatives of the sweet protein monellin, are also useful models for protein fibrillary aggregation studies. In this work, we have drawn attention to a protein dubbed Mut9, already characterized as a "super stable" MNEI variant. Comparative analysis of the respective X-ray structures revealed how the substitutions present in Mut9 eliminate several unfavorable interactions and stabilize the global structure. Molecular dynamic predictions confirmed the presence of a hydrogen-bonds network in Mut9 which increases its stability, especially at neutral pH. Thioflavin-T (ThT) binding assays and Fourier transform infrared (FTIR) spectroscopy indicated that the aggregation process occurs both at acidic and neutral pH, with and without addition of NaCl, even if with a different kinetics. Accordingly, Transmission Electron Microscopy (TEM) showed a fibrillar organization of the aggregates in all the tested conditions, albeit with some differences in the quantity and in the morphology of the fibrils. Our data underline the great potential of Mut9, which combines great stability in solution with the versatile conversion into nanostructured biomaterials.


  • Organizational Affiliation

    Department of Science and Technology, University of Sannio, Via de Sanctis, 82100 Benevento, Italy.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Monellin chain B,Monellin chain AA [auth AAA],
B [auth BBB]
97Dioscoreophyllum cumminsiiMutation(s): 0 
UniProt
Find proteins for P02881 (Dioscoreophyllum cumminsii)
Explore P02881 
Go to UniProtKB:  P02881
Find proteins for P02882 (Dioscoreophyllum cumminsii)
Explore P02882 
Go to UniProtKB:  P02882
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP02881P02882
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.19 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.216 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 31.65α = 105.995
b = 38.97β = 109.521
c = 44.13γ = 103.361
Software Package:
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
autoPROCdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-07
    Type: Initial release