8PV2 | pdb_00008pv2

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1

PDB DOI: https://doi.org/10.2210/pdb8PV2/pdb
EM Map EMD-17951: EMDB EMDataResource
NAKB: 8PV2

Classification: RIBOSOME
Organism(s): Thermochaetoides thermophila DSM 1495
Expression System: Thermochaetoides thermophila DSM 1495
Mutation(s): No

Deposited: 2023-07-17 Released: 2023-11-15
Deposition Author(s): Thoms, M., Cheng, J., Denk, T., Berninghausen, O., Beckmann, R.
Funding Organization(s): European Research Council (ERC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation.

Thoms, M., Lau, B., Cheng, J., Fromm, L., Denk, T., Kellner, N., Flemming, D., Fischer, P., Falquet, L., Berninghausen, O., Beckmann, R., Hurt, E.

(2023) EMBO Rep 24: e57984-e57984

PubMed: 37921038 Search on PubMed Search on PubMed Central
DOI: https://doi.org/10.15252/embr.202357984
Primary Citation Related Structures:
8PTW, 8PUW, 8PV1, 8PV2, 8PV3, 8PV4, 8PV5, 8PV6, 8PV7, 8PV8, 8PVK, 8PVL

PubMed Abstract:
The rixosome defined in Schizosaccharomyces pombe and humans performs diverse roles in pre-ribosomal RNA processing and gene silencing. Here, we isolate and describe the conserved rixosome from Chaetomium thermophilum, which consists of two sub-modules, the sphere-like Rix1-Ipi3-Ipi1 and the butterfly-like Las1-Grc3 complex, connected by a flexible linker. The Rix1 complex of the rixosome utilizes Sda1 as landing platform on nucleoplasmic pre-60S particles to wedge between the 5S rRNA tip and L1-stalk, thereby facilitating the 180° rotation of the immature 5S RNP towards its mature conformation. Upon rixosome positioning, the other sub-module with Las1 endonuclease and Grc3 polynucleotide-kinase can reach a strategic position at the pre-60S foot to cleave and 5' phosphorylate the nearby ITS2 pre-rRNA. Finally, inward movement of the L1 stalk permits the flexible Nop53 N-terminus with its AIM motif to become positioned at the base of the L1-stalk to facilitate Mtr4 helicase-exosome participation for completing ITS2 removal. Thus, the rixosome structure elucidates the coordination of two central ribosome biogenesis events, but its role in gene silencing may adapt similar strategies.

Organizational Affiliation

Gene Center, Ludwig-Maximilians-Universität München, Munich, Germany.

Macromolecule Content

Total Structure Weight: 3,014.03 kDa
Atom Count: 155,881
Modeled Residue Count: 14,111
Deposited Residue Count: 20,056
Unique protein chains: 53
Unique nucleic acid chains: 3

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL10	D [auth CF]	270	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0S616 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S616 Go to UniProtKB: G0S616
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S616
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleolar GTP-binding protein 1	E [auth CH]	661	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0S8F1 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S8F1 Go to UniProtKB: G0S8F1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S8F1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosome biogenesis protein NSA2 homolog	F [auth CK]	261	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0S081 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S081 Go to UniProtKB: G0S081
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S081
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative GTP binding protein	G [auth CL]	558	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SEW3 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SEW3 Go to UniProtKB: G0SEW3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SEW3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Eukaryotic translation initiation factor 6	H [auth CN]	246	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0S683 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S683 Go to UniProtKB: G0S683
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S683
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
DUF2423 domain-containing protein	I [auth CO]	120	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SHK0 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SHK0 Go to UniProtKB: G0SHK0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SHK0
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosome biogenesis protein RLP24	J [auth CQ]	225	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0S497 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S497 Go to UniProtKB: G0S497
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S497
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
Zinc finger domain-containing protein	K [auth Cb]	117	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SB32 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SB32 Go to UniProtKB: G0SB32
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SB32
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleolar GTP-binding protein 2	L [auth Cd]	627	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SBX1 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SBX1 Go to UniProtKB: G0SBX1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SBX1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosome production factor 2 homolog	M [auth Cf]	350	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SF80 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SF80 Go to UniProtKB: G0SF80
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SF80
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosome biogenesis regulatory protein	N [auth Cg]	202	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SCH6 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SCH6 Go to UniProtKB: G0SCH6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SCH6
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosome assembly protein 4	O [auth Ch]	517	Thermochaetoides thermophila DSM 1495	Mutation(s): 0 Gene Names: CTHT_0055700
UniProt
Find proteins for G0SC29 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SC29 Go to UniProtKB: G0SC29
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SC29
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
rRNA-processing protein	P [auth Cz]	123	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SCP3 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SCP3 Go to UniProtKB: G0SCP3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SCP3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L2-like protein	Q [auth LA]	254	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0S4P8 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S4P8 Go to UniProtKB: G0S4P8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S4P8
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L3-like protein	R [auth LB]	392	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0RXW1 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0RXW1 Go to UniProtKB: G0RXW1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0RXW1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L4-like protein	S [auth LC]	365	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SFC3 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SFC3 Go to UniProtKB: G0SFC3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SFC3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein l5-like protein	T [auth LD]	304	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SEG2 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SEG2 Go to UniProtKB: G0SEG2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SEG2
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L6	U [auth LE]	200	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0S0D6 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S0D6 Go to UniProtKB: G0S0D6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S0D6
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein l7-like protein	EB [auth CM], V [auth LF]	249	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SFL0 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SFL0 Go to UniProtKB: G0SFL0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SFL0
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L8	W [auth LG]	262	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SAJ9 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SAJ9 Go to UniProtKB: G0SAJ9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SAJ9
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein l9-like protein	X [auth LH]	229	Thermochaetoides thermophila DSM 1495	Mutation(s): 0

Find similar proteins by:

| 3D Structure

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative ribosomal protein	Y [auth LJ]	173	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SHQ2 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SHQ2 Go to UniProtKB: G0SHQ2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SHQ2
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L12-like protein	Z [auth LK]	165	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SGH8 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SGH8 Go to UniProtKB: G0SGH8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SGH8
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13	AA [auth LL]	213	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0S992 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S992 Go to UniProtKB: G0S992
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S992
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L14-like protein	BA [auth LM]	142	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0S1R0 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S1R0 Go to UniProtKB: G0S1R0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S1R0
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L15	CA [auth LN]	203	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0RZ88 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0RZ88 Go to UniProtKB: G0RZ88
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0RZ88
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L16-like protein	DA [auth LO]	204	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SH61 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SH61 Go to UniProtKB: G0SH61
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SH61
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein l17-like protein	EA [auth LP]	187	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SGY1 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SGY1 Go to UniProtKB: G0SGY1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SGY1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L18-like protein	FA [auth LQ]	213	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0S9B5 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S9B5 Go to UniProtKB: G0S9B5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S9B5
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L19	GA [auth LR]	2,898	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0S9T3 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S9T3 Go to UniProtKB: G0S9T3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S9T3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L20	HA [auth LS]	174	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SCE2 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SCE2 Go to UniProtKB: G0SCE2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SCE2
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein l21-like protein	IA [auth LT]	160	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0S0Z3 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S0Z3 Go to UniProtKB: G0S0Z3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S0Z3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L22-like protein	JA [auth LU]	127	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SDS8 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SDS8 Go to UniProtKB: G0SDS8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SDS8
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein l23-like protein	KA [auth LV]	139	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SI44 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SI44 Go to UniProtKB: G0SI44
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SI44
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L25-like protein	LA [auth LX]	156	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0S507 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S507 Go to UniProtKB: G0S507
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S507
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L26-like protein	MA [auth LY]	138	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0RYN9 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0RYN9 Go to UniProtKB: G0RYN9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0RYN9
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27	NA [auth LZ]	135	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0RZE9 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0RZE9 Go to UniProtKB: G0RZE9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0RZE9
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L28-like protein	OA [auth La]	149	Thermochaetoides thermophila DSM 1495	Mutation(s): 0

Find similar proteins by:

| 3D Structure

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein l30-like protein	PA [auth Lc]	108	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SEI0 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SEI0 Go to UniProtKB: G0SEI0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SEI0
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein	QA [auth Ld]	120	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SD68 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SD68 Go to UniProtKB: G0SD68
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SD68
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L32-like protein	RA [auth Le]	131	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0S6V4 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S6V4 Go to UniProtKB: G0S6V4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S6V4
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein l33-like protein	SA [auth Lf]	109	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SCL3 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SCL3 Go to UniProtKB: G0SCL3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SCL3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein l34-like protein	TA [auth Lg]	119	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SFN0 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SFN0 Go to UniProtKB: G0SFN0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SFN0
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
dolichyl-diphosphooligosaccharide--protein glycotransferase	UA [auth Lh]	935	Thermochaetoides thermophila DSM 1495	Mutation(s): 0 EC: 2.4.99.18
UniProt
Find proteins for G0S0D7 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S0D7 Go to UniProtKB: G0S0D7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S0D7
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36	VA [auth Li]	110	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SBN1 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SBN1 Go to UniProtKB: G0SBN1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SBN1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L37	WA [auth Lj]	95	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0S101 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S101 Go to UniProtKB: G0S101
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S101
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L38-like protein	XA [auth Lk]	94	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SG89 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SG89 Go to UniProtKB: G0SG89
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SG89
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL39	YA [auth Ll]	51	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for Q2H9R2 (Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)) Explore Q2H9R2 Go to UniProtKB: Q2H9R2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q2H9R2
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L43-like protein	ZA [auth Lp]	92	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0S6B0 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S6B0 Go to UniProtKB: G0S6B0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0S6B0
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein	AB [auth Lq]	147	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SHJ6 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SHJ6 Go to UniProtKB: G0SHJ6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SHJ6
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosome biogenesis protein ERB1	BB [auth CC]	801	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SCK6 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SCK6 Go to UniProtKB: G0SCK6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SCK6
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosome biogenesis protein YTM1	CB [auth CD]	495	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SFB5 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SFB5 Go to UniProtKB: G0SFB5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SFB5
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
Pescadillo homolog	DB [auth CJ]	679	Thermochaetoides thermophila DSM 1495	Mutation(s): 0
UniProt
Find proteins for G0SHX6 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SHX6 Go to UniProtKB: G0SHX6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0SHX6
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by:

(by identity cutoff)

Molecule	Chains	Length	Organism
Entity ID: 1
26S rRNA	A [auth C1]	3,338	Thermochaetoides thermophila DSM 1495
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by:

(by identity cutoff)

Molecule	Chains	Length	Organism
Entity ID: 2
5.8S rRNA	B [auth C2]	156	Thermochaetoides thermophila DSM 1495
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by:

(by identity cutoff)

Molecule	Chains	Length	Organism
Entity ID: 3
5S rRNA	C [auth C4]	119	Thermochaetoides thermophila DSM 1495
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GTP Query on GTP Download:Ideal Coordinates CCD File SDF format, chain JB [auth Cd] SDF format, chain FB [auth CH] MOL2 format, chain JB [auth Cd] MOL2 format, chain FB [auth CH] mmCIF format, chain JB [auth Cd] mmCIF format, chain FB [auth CH]	FB [auth CH], JB [auth Cd]	GUANOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₄ P₃ XKMLYUALXHKNFT-UUOKFMHZSA-N		Interactions Focus chain FB [auth CH] Focus chain JB [auth Cd] Interactions & Density Focus chain FB [auth CH] Focus chain JB [auth Cd]
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain OB [auth Lp] SDF format, chain NB [auth Lj] SDF format, chain MB [auth Lg] SDF format, chain IB [auth Cb] SDF format, chain HB [auth CQ] MOL2 format, chain OB [auth Lp] MOL2 format, chain NB [auth Lj] MOL2 format, chain MB [auth Lg] MOL2 format, chain IB [auth Cb] MOL2 format, chain HB [auth CQ] mmCIF format, chain OB [auth Lp] mmCIF format, chain NB [auth Lj] mmCIF format, chain MB [auth Lg] mmCIF format, chain IB [auth Cb] mmCIF format, chain HB [auth CQ]	HB [auth CQ], IB [auth Cb], MB [auth Lg], NB [auth Lj], OB [auth Lp]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain HB [auth CQ] Focus chain IB [auth Cb] Focus chain MB [auth Lg] Focus chain NB [auth Lj] Focus chain OB [auth Lp] Interactions & Density Focus chain HB [auth CQ] Focus chain IB [auth Cb] Focus chain MB [auth Lg] Focus chain NB [auth Lj] Focus chain OB [auth Lp]
MG Query on MG Download:Ideal Coordinates CCD File SDF format, chain LB [auth Cd] SDF format, chain KB [auth Cd] SDF format, chain GB [auth CH] MOL2 format, chain LB [auth Cd] MOL2 format, chain KB [auth Cd] MOL2 format, chain GB [auth CH] mmCIF format, chain LB [auth Cd] mmCIF format, chain KB [auth Cd] mmCIF format, chain GB [auth CH]	GB [auth CH], KB [auth Cd], LB [auth Cd]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain GB [auth CH] Focus chain KB [auth Cd] Focus chain LB [auth Cd] Interactions & Density Focus chain GB [auth CH] Focus chain KB [auth Cd] Focus chain LB [auth Cd]