8OYK

Coiled-Coil Domain of Human STIL, L736E Mutant

  • Classification: STRUCTURAL PROTEIN
  • Organism(s): Homo sapiens
  • Mutation(s): No 

  • Deposited: 2023-05-05 Released: 2023-10-18 
  • Deposition Author(s): Martin, F.J.O., Shamir, M., Woolfson, D.N., Friedler, A.
  • Funding Organization(s): European Research Council (ERC), Engineering and Physical Sciences Research Council, Biotechnology and Biological Sciences Research Council (BBSRC), Israel Science Foundation

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.183 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Molecular Mechanism of STIL Coiled-Coil Domain Oligomerization.

Shamir, M.Martin, F.J.O.Woolfson, D.N.Friedler, A.

(2023) Int J Mol Sci 24

  • DOI: https://doi.org/10.3390/ijms241914616
  • Primary Citation of Related Structures:  
    8OYK, 8OYL

  • PubMed Abstract: 

    Coiled-coil domains (CCDs) play key roles in regulating both healthy cellular processes and the pathogenesis of various diseases by controlling protein self-association and protein-protein interactions. Here, we probe the mechanism of oligomerization of a peptide representing the CCD of the STIL protein, a tetrameric multi-domain protein that is over-expressed in several cancers and associated with metastatic spread. STIL tetramerization is mediated both by an intrinsically disordered domain (STIL 400-700 ) and a structured CCD (STIL CCD 718-749 ). Disrupting STIL oligomerization via the CCD inhibits its activity in vivo. We describe a comprehensive biophysical and structural characterization of the concentration-dependent oligomerization of STIL CCD peptide. We combine analytical ultracentrifugation, fluorescence and circular dichroism spectroscopy to probe the STIL CCD peptide assembly in solution and determine dissociation constants of both the dimerization, (K D = 8 ± 2 µM) and tetramerization (K D = 68 ± 2 µM) of the WT STIL CCD peptide. The higher-order oligomers result in increased thermal stability and cooperativity of association. We suggest that this complex oligomerization mechanism regulates the activated levels of STIL in the cell and during centriole duplication. In addition, we present X-ray crystal structures for the CCD containing destabilising (L736E) and stabilising (Q729L) mutations, which reveal dimeric and tetrameric antiparallel coiled-coil structures, respectively. Overall, this study offers a basis for understanding the structural molecular biology of the STIL protein, and how it might be targeted to discover anti-cancer reagents.


  • Organizational Affiliation

    Institute of Chemistry, The Hebrew University of Jerusalem, Safra Campus Givat Ram, Jerusalem 91904, Israel.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 2 of SCL-interrupting locus protein
A, B, C, D, E
A, B, C, D, E, F
32Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q15468 (Homo sapiens)
Explore Q15468 
Go to UniProtKB:  Q15468
PHAROS:  Q15468
GTEx:  ENSG00000123473 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ15468
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download Ideal Coordinates CCD File 
G [auth A]CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.183 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.539α = 90
b = 31.269β = 98.08
c = 64.473γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
Arcimboldophasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union340764
Engineering and Physical Sciences Research CouncilUnited KingdomEP/G036764
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB R00661X 1
Israel Science FoundationIsrael939/14

Revision History  (Full details and data files)

  • Version 1.0: 2023-10-18
    Type: Initial release
  • Version 1.1: 2023-10-25
    Changes: Database references