8J0H

Crystal structure of the fission yeast Rex1BD protein(C4H3.06)

PDB DOI: https://doi.org/10.2210/pdb8J0H/pdb

Classification: NUCLEAR PROTEIN
Organism(s): Schizosaccharomyces pombe 972h-
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-04-11 Released: 2023-11-01
Deposition Author(s): Li, J., Sun, W., Chen, Y.
Funding Organization(s): Chinese Academy of Sciences

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.38 Å
R-Value Free: 0.296
R-Value Work: 0.242
R-Value Observed: 0.247

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the fission yeast Rex1BD protein(C4H3.06)

Gao, J., Sun, W., Li, J., Ban, H., Zhang, T., Liao, J., Kim, N., Lee, S., Dong, Q., Madramootoo, R., Chen, Y., Li, F.

To be published.

Macromolecule Content

Total Structure Weight: 130.07 kDa
Atom Count: 8,308
Modelled Residue Count: 1,047
Deposited Residue Count: 1,136
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein C4H3.06	A, B, C, D, E A, B, C, D, E, F, G, H	142	Schizosaccharomyces pombe 972h-	Mutation(s): 0 Gene Names: SPAC4H3.06
UniProt
Find proteins for Q10214 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore Q10214 Go to UniProtKB: Q10214
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q10214
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E A, B, C, D, E, F, G, H	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.38 Å
R-Value Free: 0.296
R-Value Work: 0.242
R-Value Observed: 0.247
Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 159.014	α = 90
b = 138.481	β = 90
c = 50.897	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data scaling
XDS	data reduction
PHASES	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-11-01

Deposition Author(s):

Funding Organization	Location	Grant Number
Chinese Academy of Sciences	China	XDB37010303

Revision History (Full details and data files)

Version 1.0: 2023-11-01
Type: Initial release
Version 1.1: 2023-11-15
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.