8HR4 | pdb_00008hr4

[D-Cys5,D-Lys16]-STp(5-17)

PDB DOI: https://doi.org/10.2210/pdb8HR4/pdb

Classification: TOXIN
Organism(s): Escherichia coli
Mutation(s): No

Deposited: 2022-12-14 Released: 2023-12-20
Deposition Author(s): Shimamoto, S., Hidaka, Y., Yoshino, S., Goto, M.
Funding Organization(s): Japan Society for the Promotion of Science (JSPS)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 500
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 8HR4

This is version 1.1 of the entry. See complete history.

Literature

The molecular basis of heat-stable enterotoxin for vaccine development and cancer cell detection

Goto, M., Yoshino, S., Kawakami, T., Murota, K., Shimamoto, S., Hidaka, Y.

To be published.

Macromolecule Content

Total Structure Weight: 1.36 kDa
Atom Count: 88
Modeled Residue Count: 13
Deposited Residue Count: 13
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DCY-CYS-GLU-LEU-CYS-CYS-ASN-PRO-ALA-CYS-ALA-DLY-CYS	A	13	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P01559 (Escherichia coli) Explore P01559 Go to UniProtKB: P01559
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P01559
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
DCY Query on DCY	A	D-PEPTIDE LINKING	C₃ H₇ N O₂ S		--
DLY Query on DLY	A	D-PEPTIDE LINKING	C₆ H₁₄ N₂ O₂		--

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 500
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-12-20

Deposition Author(s):

Funding Organization	Location	Grant Number
Japan Society for the Promotion of Science (JSPS)	Japan	16K01925

Revision History (Full details and data files)

Version 1.0: 2023-12-20
Type: Initial release
Version 1.1: 2024-11-20
Changes: Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.