8HP6

Crystal structure of (S)-2-haloacid dehalogenase D12A mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.168 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Enzymatic hydrolysis on L-azetidine-2-carboxylate ring opening

Xu, X.Yang, Q.Wang, L.Zheng, J.Gu, Y.Xing, X.W.Zhou, J.

(2023) Catal Sci Technol 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
(S)-2-haloacid dehalogenase
A, B, C
289Novosphingobium sp. MBES04Mutation(s): 1 
Gene Names: MBENS4_0996
EC: 3.8.1.2
UniProt
Find proteins for A0A0S6WSA3 (Novosphingobium sp. MBES04)
Explore A0A0S6WSA3 
Go to UniProtKB:  A0A0S6WSA3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0S6WSA3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.168 
  • Space Group: P 21 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 151.726α = 90
b = 151.726β = 90
c = 151.726γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2018YFA0901900

Revision History  (Full details and data files)

  • Version 1.0: 2023-06-21
    Type: Initial release
  • Version 1.1: 2024-05-29
    Changes: Data collection