8H3W

Crystal structure of chicken egg lysozyme at ambient temperature

• PDB DOI: https://doi.org/10.2210/pdb8H3W/pdb

• Classification: HYDROLASE
• Organism(s): Gallus gallus
• Mutation(s): No 


• Deposited: 2022-10-09 Released: 2023-03-22 
• Deposition Author(s): DeMirci, H.
• Funding Organization(s): Other government

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.39 Å
• R-Value Free: 0.225 
• R-Value Work: 0.173 
• R-Value Observed: 0.179 

Literature

Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source

Gul, M., Ayan, E., Destan, E., Johnson, J.A., Shafiei, A., Kepceoglu, A., Yilmaz, M., Ertem, F.B., Yapici, I., Tosun, B., Baldir, N., Tokay, N., Nergiz, Z., Karakadioglu, G., Paydos, S.S., Kulakman, C., Ferah, C.K., Guven, O., Atalay, N., Akcan, E.K., Cetinok, H., Arslan, N.E., Sabanoglu, K., Asci, B., Tavli, S., Gumusboga, H., Altuntas, S., Otsuka, M., Fujita, M., Tekin, S., Ciftci, H., Durdagi, S., Karaca, E., Kaplan Turkoz, B., Kabasakal, B.V., Kati, A., DeMirci, H.

(2023) Sci Rep 13: 8123

• DOI: https://doi.org/10.1038/s41598-023-33989-0

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: native gel electrophoresis

Macromolecule Content

• Total Structure Weight: 14.33 kDa 
• Atom Count: 1,052 
• Modelled Residue Count: 129 
• Deposited Residue Count: 129 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lysozyme C	A	129	Gallus gallus	Mutation(s): 0  EC: 3.2.1.17
UniProt
Find proteins for P00698 (Gallus gallus) Explore P00698  Go to UniProtKB:  P00698

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.39 Å
• R-Value Free: 0.225 
• R-Value Work: 0.173 
• R-Value Observed: 0.179 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.03	α = 90
b = 79.03	β = 90
c = 38.089	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
CrysalisPro	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-03-22 
Deposition Author(s): DeMirci, H.

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Funding Organization	Location	Grant Number
Other government	Turkey	118C270

Revision History  

• Version 1.0: 2023-03-22
  Type: Initial release
  
• Version 1.1: 2023-10-04
  Changes: Data collection, Database references
• Version 1.2: 2023-11-29
  Changes: Refinement description