8GHP

GUCY2C-ECD bound to anti-GUCY2C-scFv antibody


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.52 Å
  • R-Value Free: 0.282 
  • R-Value Work: 0.274 
  • R-Value Observed: 0.275 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Molecular insights into recognition of GUCY2C by T-cell engaging bispecific antibody anti-GUCY2CxCD3.

Rampuria, P.Mosyak, L.Root, A.R.Svenson, K.Agostino, M.J.LaVallie, E.R.

(2023) Sci Rep 13: 13408-13408

  • DOI: https://doi.org/10.1038/s41598-023-40467-0
  • Primary Citation of Related Structures:  
    8GHO, 8GHP

  • PubMed Abstract: 

    The intestinal epithelial receptor Guanylyl Cyclase C (GUCY2C) is a tumor-associated cell surface antigen expressed across gastrointestinal malignancies that can serve as an efficacious target for colorectal cancer immunotherapy. Here, we describe a yeast surface-display approach combined with an orthogonal peptide-based mapping strategy to identify the GUCY2C binding epitope of a novel anti-GUCY2CxCD3 bispecific antibody (BsAb) that recently advanced into the clinic for the treatment of cancer. The target epitope was localized to the N-terminal helix H2 of human GUCY2C, which enabled the determination of the crystal structure of the minimal GUCY2C epitope in complex with the anti-GUCY2C antibody domain. To understand if this minimal epitope covers the entire antibody binding region and to investigate the impact of epitope position on the antibody's activity, we further determined the structure of this interaction in the context of the full-length extracellular domain (ECD) of GUCY2C. We found that this epitope is positioned on the protruding membrane-distal helical region of GUCY2C and that its specific location on the surface of GUCY2C dictates the close spatial proximity of the two antigen arms in a diabody arrangement essential to the tumor killing activity of GUCY2CxCD3 BsAb.


  • Organizational Affiliation

    Biomedicine Design, Pfizer Inc., 610 Main St., Cambridge, MA, 02139, USA. pragya.rampuria@pfizer.com.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Guanylyl cyclase C421Homo sapiensMutation(s): 0 
Gene Names: GUCY2CGUC2CSTAR
EC: 4.6.1.2
UniProt & NIH Common Fund Data Resources
Find proteins for P25092 (Homo sapiens)
Explore P25092 
Go to UniProtKB:  P25092
PHAROS:  P25092
GTEx:  ENSG00000070019 
Entity Groups  
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UniProt GroupP25092
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
anti-GUCY2C-scFv antibody heavy chainB [auth H]122Homo sapiensMutation(s): 0 
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
anti-GUCY2C-scFv antibody light chainC [auth L]119Homo sapiensMutation(s): 0 
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  • Reference Sequence
Oligosaccharides

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Entity ID: 4
MoleculeChains Length2D Diagram Glycosylation3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseD [auth S]3N-Glycosylation
Glycosylation Resources
GlyTouCan:  G47362BJ
GlyCosmos:  G47362BJ
GlyGen:  G47362BJ
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.52 Å
  • R-Value Free: 0.282 
  • R-Value Work: 0.274 
  • R-Value Observed: 0.275 
  • Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 199.629α = 90
b = 199.629β = 90
c = 123.267γ = 120
Software Package:
Software NamePurpose
BUSTERrefinement
autoPROCdata reduction
STARANISOdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data

  • Released Date: 2023-08-30 
  • Deposition Author(s): Mosyak, L.

Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-30
    Type: Initial release